X染色体开放阅读框38 (xorf38)是肺腺癌的肿瘤抑制因子和潜在的预后生物标志物:第一个表征。

IF 4 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Rui Yan, Heng-Wee Tan, Na-Li Cai, Le Yu, Yan Gao, Yan-Ming Xu, Andy T Y Lau
{"title":"X染色体开放阅读框38 (xorf38)是肺腺癌的肿瘤抑制因子和潜在的预后生物标志物:第一个表征。","authors":"Rui Yan, Heng-Wee Tan, Na-Li Cai, Le Yu, Yan Gao, Yan-Ming Xu, Andy T Y Lau","doi":"10.3390/proteomes13020022","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background:</b> Previously, we found that an uncharacterized protein CXorf38 is significantly downregulated in human ZIP8-knockout (KO) cells. Given that ZIP8 regulates essential micronutrients linked to diseases including cancer, this study aims to characterize CXorf38 and evaluate its role in lung adenocarcinoma. <b>Methods:</b> iTRAQ-based proteomics was previously used to identify the abundance of proteins in ZIP8-KO cells. Cell proliferation and colony formation assays were used to examine the function of CXorf38 by overexpressing the gene in lung adenocarcinoma cell lines. Kaplan-Meier survival analysis was used to assess the prognostic value of <i>CXorf38</i>, while TCGA clinical database analysis was used to evaluate its expression in lung cancer tissues, particularly in smokers. Bioinformatics analyses (GO, KEGG, PPI, and ICI) were performed on <i>CXorf38</i>-coexpressed genes derived from patients with lung cancer. <b>Results:</b> CXorf38 overexpression suppressed lung cancer cell proliferation and colony formation, suggesting a tumor-suppressive role. Higher <i>CXorf38</i> expression correlated with improved survival in patients with lung adenocarcinoma, but not in lung squamous cell carcinoma. Clinical data showed <i>CXorf38</i> downregulation with lung cancer tissues of smokers, indicating a potential role in smoking-induced cancer progression and treatment. Functional analysis using bioinformatics linked CXorf38 to immune response regulation, suggesting involvement in the tumor immune microenvironment. <b>Conclusions:</b> Our study reveals for the first time that CXorf38 is a potential tumor suppressor, prognostic biomarker, and/or tumor immune regulator in lung adenocarcinoma-further research is warranted to explore its role in tumor immunity and its therapeutic potential.</p>","PeriodicalId":20877,"journal":{"name":"Proteomes","volume":"13 2","pages":""},"PeriodicalIF":4.0000,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12196990/pdf/","citationCount":"0","resultStr":"{\"title\":\"Chromosome X Open Reading Frame 38 (CXorf38) Is a Tumor Suppressor and Potential Prognostic Biomarker in Lung Adenocarcinoma: The First Characterization.\",\"authors\":\"Rui Yan, Heng-Wee Tan, Na-Li Cai, Le Yu, Yan Gao, Yan-Ming Xu, Andy T Y Lau\",\"doi\":\"10.3390/proteomes13020022\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background:</b> Previously, we found that an uncharacterized protein CXorf38 is significantly downregulated in human ZIP8-knockout (KO) cells. Given that ZIP8 regulates essential micronutrients linked to diseases including cancer, this study aims to characterize CXorf38 and evaluate its role in lung adenocarcinoma. <b>Methods:</b> iTRAQ-based proteomics was previously used to identify the abundance of proteins in ZIP8-KO cells. Cell proliferation and colony formation assays were used to examine the function of CXorf38 by overexpressing the gene in lung adenocarcinoma cell lines. Kaplan-Meier survival analysis was used to assess the prognostic value of <i>CXorf38</i>, while TCGA clinical database analysis was used to evaluate its expression in lung cancer tissues, particularly in smokers. Bioinformatics analyses (GO, KEGG, PPI, and ICI) were performed on <i>CXorf38</i>-coexpressed genes derived from patients with lung cancer. <b>Results:</b> CXorf38 overexpression suppressed lung cancer cell proliferation and colony formation, suggesting a tumor-suppressive role. Higher <i>CXorf38</i> expression correlated with improved survival in patients with lung adenocarcinoma, but not in lung squamous cell carcinoma. Clinical data showed <i>CXorf38</i> downregulation with lung cancer tissues of smokers, indicating a potential role in smoking-induced cancer progression and treatment. Functional analysis using bioinformatics linked CXorf38 to immune response regulation, suggesting involvement in the tumor immune microenvironment. <b>Conclusions:</b> Our study reveals for the first time that CXorf38 is a potential tumor suppressor, prognostic biomarker, and/or tumor immune regulator in lung adenocarcinoma-further research is warranted to explore its role in tumor immunity and its therapeutic potential.</p>\",\"PeriodicalId\":20877,\"journal\":{\"name\":\"Proteomes\",\"volume\":\"13 2\",\"pages\":\"\"},\"PeriodicalIF\":4.0000,\"publicationDate\":\"2025-06-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12196990/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proteomes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3390/proteomes13020022\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteomes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3390/proteomes13020022","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:之前,我们发现一种未表征的蛋白xorf38在人类zip8敲除(KO)细胞中显著下调。鉴于ZIP8调控与癌症等疾病相关的必需微量营养素,本研究旨在表征xorf38并评估其在肺腺癌中的作用。方法:先前使用基于itraq的蛋白质组学来鉴定ZIP8-KO细胞中蛋白质的丰度。通过细胞增殖和集落形成实验,通过在肺腺癌细胞系中过表达xorf38基因来检测其功能。使用Kaplan-Meier生存分析来评估xorf38的预后价值,而使用TCGA临床数据库分析来评估其在肺癌组织中的表达,特别是在吸烟者中。对来自肺癌患者的xorf38共表达基因进行生物信息学分析(GO、KEGG、PPI和ICI)。结果:xorf38过表达抑制肺癌细胞增殖和集落形成,提示其具有抑瘤作用。高表达的xorf38与肺腺癌患者的生存率相关,但与肺鳞状细胞癌患者的生存率无关。临床数据显示,在吸烟者的肺癌组织中,CXorf38表达下调,提示其在吸烟诱导的癌症进展和治疗中可能发挥作用。生物信息学功能分析将xorf38与免疫应答调节联系起来,提示其参与肿瘤免疫微环境。结论:我们的研究首次揭示了xorf38在肺腺癌中是一种潜在的肿瘤抑制因子、预后生物标志物和/或肿瘤免疫调节剂,值得进一步研究其在肿瘤免疫中的作用及其治疗潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Chromosome X Open Reading Frame 38 (CXorf38) Is a Tumor Suppressor and Potential Prognostic Biomarker in Lung Adenocarcinoma: The First Characterization.

Background: Previously, we found that an uncharacterized protein CXorf38 is significantly downregulated in human ZIP8-knockout (KO) cells. Given that ZIP8 regulates essential micronutrients linked to diseases including cancer, this study aims to characterize CXorf38 and evaluate its role in lung adenocarcinoma. Methods: iTRAQ-based proteomics was previously used to identify the abundance of proteins in ZIP8-KO cells. Cell proliferation and colony formation assays were used to examine the function of CXorf38 by overexpressing the gene in lung adenocarcinoma cell lines. Kaplan-Meier survival analysis was used to assess the prognostic value of CXorf38, while TCGA clinical database analysis was used to evaluate its expression in lung cancer tissues, particularly in smokers. Bioinformatics analyses (GO, KEGG, PPI, and ICI) were performed on CXorf38-coexpressed genes derived from patients with lung cancer. Results: CXorf38 overexpression suppressed lung cancer cell proliferation and colony formation, suggesting a tumor-suppressive role. Higher CXorf38 expression correlated with improved survival in patients with lung adenocarcinoma, but not in lung squamous cell carcinoma. Clinical data showed CXorf38 downregulation with lung cancer tissues of smokers, indicating a potential role in smoking-induced cancer progression and treatment. Functional analysis using bioinformatics linked CXorf38 to immune response regulation, suggesting involvement in the tumor immune microenvironment. Conclusions: Our study reveals for the first time that CXorf38 is a potential tumor suppressor, prognostic biomarker, and/or tumor immune regulator in lung adenocarcinoma-further research is warranted to explore its role in tumor immunity and its therapeutic potential.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Proteomes
Proteomes Biochemistry, Genetics and Molecular Biology-Clinical Biochemistry
CiteScore
6.50
自引率
3.00%
发文量
37
审稿时长
11 weeks
期刊介绍: Proteomes (ISSN 2227-7382) is an open access, peer reviewed journal on all aspects of proteome science. Proteomes covers the multi-disciplinary topics of structural and functional biology, protein chemistry, cell biology, methodology used for protein analysis, including mass spectrometry, protein arrays, bioinformatics, HTS assays, etc. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on the length of papers. Scope: -whole proteome analysis of any organism -disease/pharmaceutical studies -comparative proteomics -protein-ligand/protein interactions -structure/functional proteomics -gene expression -methodology -bioinformatics -applications of proteomics
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信