特定区域的平均场模型增强了局部和全局脑动力学的模拟。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Roberta Maria Lorenzi, Fulvia Palesi, Claudia Casellato, Claudia A M Gandini Wheeler-Kingshott, Egidio D'Angelo
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引用次数: 0

摘要

脑动力学可以使用虚拟脑模型进行模拟,其中振荡活动的标准数学表示通常适用于所有皮层和皮层下区域。然而,一些大脑区域具有特定的微电路特性,这些特性不能被标准振荡器再现。此外,基于磁共振成像(MRI)的连接体可能无法捕获局部电路连接。结合局部神经元和微电路计算特性的区域特定模型最近使用平均场(MF)方法生成,并提出影响大规模脑动力学。在这里,我们使用小脑皮层的MF来生成整个小脑的介观模型,该模型具有多个小脑皮层区域与小脑深部核的预先有线连接。然后用这种多节点小脑MF代替相应的标准振荡器,为一组健康受试者建立小脑平均场虚拟脑(cMF-TVB)。模拟结果表明,与仅由标准振荡器组成的均匀模型相比,由cMF-TVB产生的电生理和fMRI信号显著提高了局部和全局动力学的适应度。cMF-TVB再现了小脑回路典型的节律振荡和一致性,并允许将电生理和功能性MRI信号与特定神经元群相关联。总的来说,基于MF和预有线电路连接的区域特定模型可以显著改善虚拟大脑模拟,促进有效的大脑数字双胞胎的产生,可用于生理研究和临床应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Region-specific mean field models enhance simulations of local and global brain dynamics.

Brain dynamics can be simulated using virtual brain models, in which a standard mathematical representation of oscillatory activity is usually adopted for all cortical and subcortical regions. However, some brain regions have specific microcircuit properties that are not recapitulated by standard oscillators. Moreover, magnetic resonance imaging (MRI)-based connectomes may not be able to capture local circuit connectivity. Region-specific models incorporating computational properties of local neurons and microcircuits have recently been generated using the mean field (MF) approach and proposed to impact large-scale brain dynamics. Here, we have used a MF of the cerebellar cortex to generate a mesoscopic model of the whole cerebellum featuring a prewired connectivity of multiple cerebellar cortical areas with deep cerebellar nuclei. This multi-node cerebellar MF was then used to substitute the corresponding standard oscillators and build up a cerebellar mean field virtual brain (cMF-TVB) for a group of healthy human subjects. Simulations revealed that electrophysiological and fMRI signals generated by the cMF-TVB significantly improved the fitness of local and global dynamics with respect to a homogeneous model made solely of standard oscillators. The cMF-TVB reproduced the rhythmic oscillations and coherence typical of the cerebellar circuit and allowed to correlate electrophysiological and functional MRI signals to specific neuronal populations. In aggregate, region-specific models based on MF and pre-wired circuit connectivity can significantly improve virtual brain simulations, fostering the generation of effective brain digital twins that could be used for physiological studies and clinical applications.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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