用计算方法研究芘、苯并[e]芘及其臭氧分解产物的结构、电子和毒性特征。

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Dhyani Vadgama, Harshil Shah, Satyam Shinde, Rohit Srivastava
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引用次数: 0

摘要

背景:多环芳烃(PAHs)对大气和水圈的分解过程产生重大影响,并因其毒性和远距离运输能力而构成健康风险。尽管进行了广泛的实验和实地研究,但对臭氧分解后的化学反应性、转化途径和毒性的详细分子水平理解仍然有限。本研究利用量子化学方法研究臭氧分解过程中多环芳烃(芘和苯并[e]芘)的结构、电子和毒理学变化。芘和苯并[e]芘的臭氧分解产物表现出改变的稳定性和反应性,这表明它们不太可能参与随后的大气反应。重要的是,对这些化合物的毒性评估表明,除单臭氧芘和苯并[e]芘双醛外,产品的毒性低于母体化合物。通过整合这些见解,环境模拟可以更好地预测大气中多环芳烃的行为及其在臭氧分解中的作用,从而有助于开发更准确的大气模型。方法:采用Gaussian 09软件进行密度泛函理论计算,研究多环芳烃及其臭氧分解产物的电子和结构性质。采用基集为6-311++G(d,p)、def2-TZVP和cc-pVTZ的B3LYP、M06-2X、ωB97XD、PW6B95和PBE0泛函来确定合适的方法。其中,B3LYP/6-311++G(d,p)与实验数据吻合较好。因此,采用B3LYP/6-311++G(d,p)水平理论分析反应物和生成物分子的HOMO-LUMO、静电势和频率。使用生态结构活性关系(ECOSARV2.2)软件评估这些化合物的毒性特征,该软件估计其环境暴露风险。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Investigation of structural, electronic and toxicity profiles of pyrene, benzo[e]pyrene, and their ozonolysis products by using computational methods

Context

Polycyclic aromatic hydrocarbons (PAHs) have a substantial impact on the decomposition process of the atmosphere and the hydrosphere and also pose health risks due to toxicity and long-range transport capabilities. Despite extensive experimental and field studies, the detailed molecular-level understanding of their chemical reactivity, transformation pathways and toxicity after ozonolysis remains limited. This study investigates the structural, electronic and toxicological changes occurring to PAH (pyrene and benzo[e]pyrene) upon ozonolysis using a quantum chemical approach. Ozonolysis products of pyrene and benzo[e]pyrene exhibit altered stability and reactivity, which suggests that they are unlikely to participate in subsequent atmospheric reactions. Importantly, the toxicity assessment of these compounds indicates that products are less toxic than parental compounds, except pyrene mono-ozonide and benzo[e]pyrene dialdehyde. By integrating these insights, environmental simulations can better predict the behaviour of PAHs in the atmosphere and their role in ozone decomposition, contributing to the development of a more accurate atmospheric model.

Methods

Gaussian 09 software is used to carry out Density Functional Theory calculations for investigating electronic and structural properties of PAHs and their ozonolysis products. The B3LYP, M06-2X, ωB97XD, PW6B95 and PBE0 functionals with basis sets 6–311++G(d,p), def2-TZVP and cc-pVTZ are employed to determine the suitable method. Among all, B3LYP/6–311++G(d,p) demonstrates better alignment with experimental data for pyrene. Therefore, B3LYP/6–311++G(d,p) level of theory is used to analyse the HOMO–LUMO, electrostatic potential and frequency of reactants and product molecules. The toxicity profile of these compounds is assessed using the ecological structure activity relationships (ECOSARV2.2) software, which estimates their environmental exposure risk.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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