MlCOFSyn:一个促进二维共价有机框架合成的机器学习框架

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Yue Shi, Jiaxin Tian and Haoyuan Li*, 
{"title":"MlCOFSyn:一个促进二维共价有机框架合成的机器学习框架","authors":"Yue Shi,&nbsp;Jiaxin Tian and Haoyuan Li*,&nbsp;","doi":"10.1021/acs.jcim.5c0044610.1021/acs.jcim.5c00446","DOIUrl":null,"url":null,"abstract":"<p >Two-dimensional covalent organic frameworks (2D COFs) have been historically synthesized empirically, often resulting in uncontrolled crystallization and inferior crystal sizes, which limit their performance in various applications. Recently, crystallization models tailored for 2D COFs have been developed that demonstrate great potential in facilitating their rational synthesis. Nevertheless, effective strategies to leverage these models for 2D COF synthesis remain underdeveloped, and the specialized expertise required, combined with the high computational costs of exploring the vast chemical space, poses additional barriers to their practical application. In this work, we present a machine learning framework, named MlCOFSyn, that is designed to assist in the synthesis of 2D COFs. This framework explores the application of 2D COF crystallization models by implementing three pivotal functionalities: predicting crystal sizes based on the input monomer addition sequence, reverse-engineering monomer addition sequences to achieve desired crystal sizes, and optimizing monomer addition sequences to produce larger crystals. These functionalities are critical for the controlled synthesis of 2D COFs but have been largely underexplored due to the lack of accessible theoretical tools. The MlCOFSyn framework leverages efficient machine-learning algorithms and features an intuitive graphical interface, enabling its use on consumer-grade computers by nonexperts. By addressing these gaps, the MlCOFSyn framework represents a substantial advancement in facilitating 2D COF research and synthesis.</p>","PeriodicalId":44,"journal":{"name":"Journal of Chemical Information and Modeling ","volume":"65 12","pages":"6027–6037 6027–6037"},"PeriodicalIF":5.3000,"publicationDate":"2025-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"MlCOFSyn: A Machine Learning Framework To Facilitate the Synthesis of 2D Covalent Organic Frameworks\",\"authors\":\"Yue Shi,&nbsp;Jiaxin Tian and Haoyuan Li*,&nbsp;\",\"doi\":\"10.1021/acs.jcim.5c0044610.1021/acs.jcim.5c00446\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Two-dimensional covalent organic frameworks (2D COFs) have been historically synthesized empirically, often resulting in uncontrolled crystallization and inferior crystal sizes, which limit their performance in various applications. Recently, crystallization models tailored for 2D COFs have been developed that demonstrate great potential in facilitating their rational synthesis. Nevertheless, effective strategies to leverage these models for 2D COF synthesis remain underdeveloped, and the specialized expertise required, combined with the high computational costs of exploring the vast chemical space, poses additional barriers to their practical application. In this work, we present a machine learning framework, named MlCOFSyn, that is designed to assist in the synthesis of 2D COFs. This framework explores the application of 2D COF crystallization models by implementing three pivotal functionalities: predicting crystal sizes based on the input monomer addition sequence, reverse-engineering monomer addition sequences to achieve desired crystal sizes, and optimizing monomer addition sequences to produce larger crystals. These functionalities are critical for the controlled synthesis of 2D COFs but have been largely underexplored due to the lack of accessible theoretical tools. The MlCOFSyn framework leverages efficient machine-learning algorithms and features an intuitive graphical interface, enabling its use on consumer-grade computers by nonexperts. By addressing these gaps, the MlCOFSyn framework represents a substantial advancement in facilitating 2D COF research and synthesis.</p>\",\"PeriodicalId\":44,\"journal\":{\"name\":\"Journal of Chemical Information and Modeling \",\"volume\":\"65 12\",\"pages\":\"6027–6037 6027–6037\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2025-06-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Information and Modeling \",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jcim.5c00446\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MEDICINAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Information and Modeling ","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jcim.5c00446","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
引用次数: 0

摘要

二维共价有机框架(2D COFs)历来都是经验合成的,但往往导致结晶不受控制和晶体尺寸较差,限制了它们在各种应用中的性能。最近,为2D COFs量身定制的结晶模型已经开发出来,在促进其合理合成方面显示出巨大的潜力。然而,利用这些模型进行二维COF合成的有效策略仍然不发达,而且所需的专业知识,以及探索广阔化学空间的高计算成本,给它们的实际应用带来了额外的障碍。在这项工作中,我们提出了一个名为MlCOFSyn的机器学习框架,旨在帮助合成2D COFs。该框架通过实现三个关键功能来探索二维COF结晶模型的应用:基于输入的单体添加序列预测晶体尺寸,反向工程单体添加序列以获得所需的晶体尺寸,以及优化单体添加序列以产生更大的晶体。这些功能对于二维COFs的受控合成至关重要,但由于缺乏可访问的理论工具,这些功能在很大程度上尚未得到充分探索。MlCOFSyn框架利用高效的机器学习算法,并具有直观的图形界面,使其能够在非专家的消费级计算机上使用。通过解决这些差距,MlCOFSyn框架代表了促进二维COF研究和合成的实质性进步。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

MlCOFSyn: A Machine Learning Framework To Facilitate the Synthesis of 2D Covalent Organic Frameworks

MlCOFSyn: A Machine Learning Framework To Facilitate the Synthesis of 2D Covalent Organic Frameworks

Two-dimensional covalent organic frameworks (2D COFs) have been historically synthesized empirically, often resulting in uncontrolled crystallization and inferior crystal sizes, which limit their performance in various applications. Recently, crystallization models tailored for 2D COFs have been developed that demonstrate great potential in facilitating their rational synthesis. Nevertheless, effective strategies to leverage these models for 2D COF synthesis remain underdeveloped, and the specialized expertise required, combined with the high computational costs of exploring the vast chemical space, poses additional barriers to their practical application. In this work, we present a machine learning framework, named MlCOFSyn, that is designed to assist in the synthesis of 2D COFs. This framework explores the application of 2D COF crystallization models by implementing three pivotal functionalities: predicting crystal sizes based on the input monomer addition sequence, reverse-engineering monomer addition sequences to achieve desired crystal sizes, and optimizing monomer addition sequences to produce larger crystals. These functionalities are critical for the controlled synthesis of 2D COFs but have been largely underexplored due to the lack of accessible theoretical tools. The MlCOFSyn framework leverages efficient machine-learning algorithms and features an intuitive graphical interface, enabling its use on consumer-grade computers by nonexperts. By addressing these gaps, the MlCOFSyn framework represents a substantial advancement in facilitating 2D COF research and synthesis.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信