Dongyu Lyu, Vivin Vinod, Matthias Holzenkamp, Yannick Marcel Holtkamp, Sayan Maity, Carlos R. Salazar, Ulrich Kleinekathöfer, Peter Zaspel
{"title":"粘土表面卟啉染料之间的激发态能转移:采用多保真机器学习的研究","authors":"Dongyu Lyu, Vivin Vinod, Matthias Holzenkamp, Yannick Marcel Holtkamp, Sayan Maity, Carlos R. Salazar, Ulrich Kleinekathöfer, Peter Zaspel","doi":"10.1002/adts.202500271","DOIUrl":null,"url":null,"abstract":"Natural light-harvesting antenna complexes efficiently capture solar energy mostly using chlorophyll molecules, i.e., magnesium porphyrin pigments, embedded in a protein matrix. Inspired by this natural configuration, artificial clay-porphyrin antenna structures have experimentally been synthesized and demonstrated to exhibit remarkable excitation energy transfer properties. The current study presents a computational design and simulations of a synthetic light-harvesting system that emulates natural mechanisms by arranging cationic free-base porphyrin molecules on an anionic clay surface. The transfer of excitation energy among the porphyrin dyes is investigated using a multiscale quantum mechanics/molecular mechanics (QM/MM) approach based on the semi-empirical density functional-based tight-binding theory for the ground state dynamics. To improve the accuracy of the results, an innovative multifidelity machine learning approach is incorporated, which allows the prediction of excitation energies at the numerically demanding time-dependent density functional theory level together with the def2-SVP basis set. This approach is applied to an extensive dataset of 640 k geometries for the 90-atom porphyrin structures, facilitating a thorough analysis of the excitation energy diffusion among the porphyrin molecules adsorbed to the clay surface. The insights gained from this study, inspired by natural light-harvesting complexes, demonstrate the potential of porphyrin-clay systems as effective energy transfer systems.","PeriodicalId":7219,"journal":{"name":"Advanced Theory and Simulations","volume":"1 1","pages":""},"PeriodicalIF":2.9000,"publicationDate":"2025-06-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Excitation Energy Transfer between Porphyrin Dyes on a Clay Surface: A Study Employing Multifidelity Machine Learning\",\"authors\":\"Dongyu Lyu, Vivin Vinod, Matthias Holzenkamp, Yannick Marcel Holtkamp, Sayan Maity, Carlos R. Salazar, Ulrich Kleinekathöfer, Peter Zaspel\",\"doi\":\"10.1002/adts.202500271\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Natural light-harvesting antenna complexes efficiently capture solar energy mostly using chlorophyll molecules, i.e., magnesium porphyrin pigments, embedded in a protein matrix. Inspired by this natural configuration, artificial clay-porphyrin antenna structures have experimentally been synthesized and demonstrated to exhibit remarkable excitation energy transfer properties. The current study presents a computational design and simulations of a synthetic light-harvesting system that emulates natural mechanisms by arranging cationic free-base porphyrin molecules on an anionic clay surface. The transfer of excitation energy among the porphyrin dyes is investigated using a multiscale quantum mechanics/molecular mechanics (QM/MM) approach based on the semi-empirical density functional-based tight-binding theory for the ground state dynamics. To improve the accuracy of the results, an innovative multifidelity machine learning approach is incorporated, which allows the prediction of excitation energies at the numerically demanding time-dependent density functional theory level together with the def2-SVP basis set. This approach is applied to an extensive dataset of 640 k geometries for the 90-atom porphyrin structures, facilitating a thorough analysis of the excitation energy diffusion among the porphyrin molecules adsorbed to the clay surface. The insights gained from this study, inspired by natural light-harvesting complexes, demonstrate the potential of porphyrin-clay systems as effective energy transfer systems.\",\"PeriodicalId\":7219,\"journal\":{\"name\":\"Advanced Theory and Simulations\",\"volume\":\"1 1\",\"pages\":\"\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2025-06-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advanced Theory and Simulations\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1002/adts.202500271\",\"RegionNum\":4,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advanced Theory and Simulations","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1002/adts.202500271","RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
Excitation Energy Transfer between Porphyrin Dyes on a Clay Surface: A Study Employing Multifidelity Machine Learning
Natural light-harvesting antenna complexes efficiently capture solar energy mostly using chlorophyll molecules, i.e., magnesium porphyrin pigments, embedded in a protein matrix. Inspired by this natural configuration, artificial clay-porphyrin antenna structures have experimentally been synthesized and demonstrated to exhibit remarkable excitation energy transfer properties. The current study presents a computational design and simulations of a synthetic light-harvesting system that emulates natural mechanisms by arranging cationic free-base porphyrin molecules on an anionic clay surface. The transfer of excitation energy among the porphyrin dyes is investigated using a multiscale quantum mechanics/molecular mechanics (QM/MM) approach based on the semi-empirical density functional-based tight-binding theory for the ground state dynamics. To improve the accuracy of the results, an innovative multifidelity machine learning approach is incorporated, which allows the prediction of excitation energies at the numerically demanding time-dependent density functional theory level together with the def2-SVP basis set. This approach is applied to an extensive dataset of 640 k geometries for the 90-atom porphyrin structures, facilitating a thorough analysis of the excitation energy diffusion among the porphyrin molecules adsorbed to the clay surface. The insights gained from this study, inspired by natural light-harvesting complexes, demonstrate the potential of porphyrin-clay systems as effective energy transfer systems.
期刊介绍:
Advanced Theory and Simulations is an interdisciplinary, international, English-language journal that publishes high-quality scientific results focusing on the development and application of theoretical methods, modeling and simulation approaches in all natural science and medicine areas, including:
materials, chemistry, condensed matter physics
engineering, energy
life science, biology, medicine
atmospheric/environmental science, climate science
planetary science, astronomy, cosmology
method development, numerical methods, statistics