Raveendra Madhukar Bhat , Vijayarani Potluri , Bhavita Kattula , Venkatraman Hegde , Mohamed F AlAjmi , Mohammad Rizwan Alam , Pragati K. Prasad , Rangappa S. Keri
{"title":"lonidamine-tacrine/quinazoline复合物己糖激酶2抑制研究:设计、合成、分子对接和动力学模拟","authors":"Raveendra Madhukar Bhat , Vijayarani Potluri , Bhavita Kattula , Venkatraman Hegde , Mohamed F AlAjmi , Mohammad Rizwan Alam , Pragati K. Prasad , Rangappa S. Keri","doi":"10.1016/j.molstruc.2025.142996","DOIUrl":null,"url":null,"abstract":"<div><div>Glycolysis inhibition is known as a therapeutic method for cancer therapy. Hexokinase 2 (HK2) is the rate-limiting enzyme, catalyzing the critical process of glucose phosphorylation for later use in glycolysis and other signaling pathways. Positive HK2 expression often supports cancer cell survival while systemic deletion or inhibition of HK2 has shown to hinder tumor growth. Herein, we have employed a structure-based approach, designed and synthesized conjugates of Lonidamine (LND), a known HK2 inhibitor, and evaluated their HK2 enzyme inhibitory activity. In particular, the LND-tacrine and LND-quinazoline conjugates connected through amide linkages of different linker lengths have been explored as potent HK2 inhibitors <em>in vitro</em>. The hit molecules have been identified in the study that inhibit HK2 at sub-micromolar concentrations working better than the parent LND molecule. These molecules have shown selective cytotoxicity against cancerous HepG2 cells than the non-malignant HEK cells. Additionally, some of these conjugates have acted as PROTACs/degraders that have shown dose dependent, systematic degradation of HK2 in HepG2 cells. Hence, for the first time tacrine and quinazoline motifs have been explored as degraders. These findings have been backed by docking and simulation study.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1344 ","pages":"Article 142996"},"PeriodicalIF":4.0000,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Hexokinase 2 inhibition study of lonidamine-tacrine/quinazoline hybrids: Design, synthesis, molecular docking, and dynamics simulations\",\"authors\":\"Raveendra Madhukar Bhat , Vijayarani Potluri , Bhavita Kattula , Venkatraman Hegde , Mohamed F AlAjmi , Mohammad Rizwan Alam , Pragati K. Prasad , Rangappa S. Keri\",\"doi\":\"10.1016/j.molstruc.2025.142996\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Glycolysis inhibition is known as a therapeutic method for cancer therapy. Hexokinase 2 (HK2) is the rate-limiting enzyme, catalyzing the critical process of glucose phosphorylation for later use in glycolysis and other signaling pathways. Positive HK2 expression often supports cancer cell survival while systemic deletion or inhibition of HK2 has shown to hinder tumor growth. Herein, we have employed a structure-based approach, designed and synthesized conjugates of Lonidamine (LND), a known HK2 inhibitor, and evaluated their HK2 enzyme inhibitory activity. In particular, the LND-tacrine and LND-quinazoline conjugates connected through amide linkages of different linker lengths have been explored as potent HK2 inhibitors <em>in vitro</em>. The hit molecules have been identified in the study that inhibit HK2 at sub-micromolar concentrations working better than the parent LND molecule. These molecules have shown selective cytotoxicity against cancerous HepG2 cells than the non-malignant HEK cells. Additionally, some of these conjugates have acted as PROTACs/degraders that have shown dose dependent, systematic degradation of HK2 in HepG2 cells. Hence, for the first time tacrine and quinazoline motifs have been explored as degraders. These findings have been backed by docking and simulation study.</div></div>\",\"PeriodicalId\":16414,\"journal\":{\"name\":\"Journal of Molecular Structure\",\"volume\":\"1344 \",\"pages\":\"Article 142996\"},\"PeriodicalIF\":4.0000,\"publicationDate\":\"2025-06-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Structure\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022286025016692\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Structure","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022286025016692","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Hexokinase 2 inhibition study of lonidamine-tacrine/quinazoline hybrids: Design, synthesis, molecular docking, and dynamics simulations
Glycolysis inhibition is known as a therapeutic method for cancer therapy. Hexokinase 2 (HK2) is the rate-limiting enzyme, catalyzing the critical process of glucose phosphorylation for later use in glycolysis and other signaling pathways. Positive HK2 expression often supports cancer cell survival while systemic deletion or inhibition of HK2 has shown to hinder tumor growth. Herein, we have employed a structure-based approach, designed and synthesized conjugates of Lonidamine (LND), a known HK2 inhibitor, and evaluated their HK2 enzyme inhibitory activity. In particular, the LND-tacrine and LND-quinazoline conjugates connected through amide linkages of different linker lengths have been explored as potent HK2 inhibitors in vitro. The hit molecules have been identified in the study that inhibit HK2 at sub-micromolar concentrations working better than the parent LND molecule. These molecules have shown selective cytotoxicity against cancerous HepG2 cells than the non-malignant HEK cells. Additionally, some of these conjugates have acted as PROTACs/degraders that have shown dose dependent, systematic degradation of HK2 in HepG2 cells. Hence, for the first time tacrine and quinazoline motifs have been explored as degraders. These findings have been backed by docking and simulation study.
期刊介绍:
The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including:
• Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.)
• Chemical intermediates
• Molecules in excited states
• Biological molecules
• Polymers.
The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example:
• Infrared spectroscopy (mid, far, near)
• Raman spectroscopy and non-linear Raman methods (CARS, etc.)
• Electronic absorption spectroscopy
• Optical rotatory dispersion and circular dichroism
• Fluorescence and phosphorescence techniques
• Electron spectroscopies (PES, XPS), EXAFS, etc.
• Microwave spectroscopy
• Electron diffraction
• NMR and ESR spectroscopies
• Mössbauer spectroscopy
• X-ray crystallography
• Charge Density Analyses
• Computational Studies (supplementing experimental methods)
We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.