利用半经验量子化学迁移学习深度拉曼模型。

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Jawad Kamran, Julian Hniopek and Thomas Bocklitz*, 
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引用次数: 0

摘要

生物光子技术如拉曼光谱是获得高度特异性分子信息的有力工具。由于其最小的样品制备要求,拉曼光谱被广泛应用于不同的科学学科,通常与化学计量学,机器学习(ML)和深度学习(DL)相结合。然而,拉曼光谱缺乏用于模型训练的大型独立拉曼光谱数据库,导致过拟合、过高估计和模型推广能力有限。我们通过使用半经验量子化学方法生成模拟振动谱来解决这个问题,使深度学习模型能够在大型合成数据集上进行有效的预训练。这些预训练的模型然后在一个较小的细菌光谱实验拉曼数据集上进行微调。迁移学习显着降低了计算成本,同时保持了与在实际生物光子应用中从头开始训练的模型相当的性能。结果验证了合成数据在预训练深度拉曼模型中的实用性,并为资源有限的环境下的光谱分析提供了一个可扩展的框架。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Transfer-Learning Deep Raman Models Using Semiempirical Quantum Chemistry

Biophotonic technologies such as Raman spectroscopy are powerful tools for obtaining highly specific molecular information. Due to its minimal sample preparation requirements, Raman spectroscopy is widely used across diverse scientific disciplines, often in combination with chemometrics, machine learning (ML), and deep learning (DL). However, Raman spectroscopy lacks large databases of independent Raman spectra for model training, leading to overfitting, overestimation, and limited model generalizability. We address this problem by generating simulated vibrational spectra using semiempirical quantum chemistry methods, enabling the efficient pretraining of deep learning models on large synthetic data sets. These pretrained models are then fine-tuned on a smaller experimental Raman data set of bacterial spectra. Transfer learning significantly reduces the computational cost while maintaining performance comparable to models trained from scratch in this real biophotonic application. The results validate the utility of synthetic data for pretraining deep Raman models and offer a scalable framework for spectral analysis in resource-limited settings.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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