细菌蛋白的晚期糖基化终产物(AGE)交联:AGE修饰在我们的研究中未被检测到吗?

IF 2.3 2区 物理与天体物理 Q3 CHEMISTRY, PHYSICAL
Structural Dynamics-Us Pub Date : 2025-06-12 eCollection Date: 2025-05-01 DOI:10.1063/4.0000754
Bonnie J Cuthbert, Steven J Jensen, Christopher S Hayes, Celia W Goulding
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引用次数: 0

摘要

小活性分子乙二醛(GO)和甲基乙二醛(MGO)是代谢过程的常见副产物。已知氧化石墨烯和氧化镁可以修饰蛋白质、DNA和脂质,导致糖基化终产物(AGEs)的提前生成。AGEs与许多人类疾病有关,但由于GO和MGO的广泛存在,AGEs在生命的所有三个领域都被发现。最近的结构研究表明,抗菌磷脂酶毒素含有甲基乙二醛衍生的咪唑交联(MODIC)。与与人类疾病和蛋白质功能障碍相关的AGEs不同,这种毒素的酶活性需要交联,这表明MODIC作为一种真正的翻译后修饰来促进功能。modic修饰的毒素是蛋白质数据库中第一个具有age修饰的结构。然而,由于GO和MGO存在于所有细胞中,因此年龄修饰可能比目前报道的更为普遍,但未被发现。我们使用毒素的MODIC结构基序来查询蛋白质数据库中其他修饰蛋白。这次搜索发现了大肠杆菌素Ia成孔毒素。利用沉积的晶体结构和colicin Ia的结构数据,我们能够在电子密度图中模拟乙二醛衍生的咪唑交联或MODIC修饰,这表明GO/MGO修饰确实可能在细菌蛋白质中更常见。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Advanced glycation end product (AGE) crosslinking of a bacterial protein: Are AGE-modifications going undetected in our studies?

The small reactive molecules, glyoxal (GO) and methylglyoxal (MGO), are common byproducts of metabolic processes. GO and MGO are known to modify proteins, DNA, and lipids, resulting in advance glycation end products (AGEs). AGEs are linked to numerous human diseases but are found across all three domains of life due to the widespread presence of GO and MGO. Recent structural studies have revealed that an antibacterial phospholipase toxin contains a methylglyoxal-derived imidazolium crosslink (MODIC). Unlike AGEs that are associated with human diseases and protein dysfunction, crosslinking is required for the toxin's enzymatic activity, indicating that MODIC acts as a bona fide post-translational modification to promote function. The MODIC-modified toxin represents the first structure in the protein data bank with an AGE-modification. However, because GO and MGO are present in all cells, AGE-modifications are likely more prevalent than currently reported but have gone undetected. We used the toxin's MODIC structural motif to query the protein data bank for other modified proteins. This search recovered the colicin Ia pore-forming toxin. Using the deposited crystal structure and structural data for colicin Ia, we were able to model glyoxal-derived imidazolium crosslink or MODIC modifications into the electron density map, suggesting that GO/MGO modifications may indeed be more common in bacterial proteins.

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来源期刊
Structural Dynamics-Us
Structural Dynamics-Us CHEMISTRY, PHYSICALPHYSICS, ATOMIC, MOLECU-PHYSICS, ATOMIC, MOLECULAR & CHEMICAL
CiteScore
5.50
自引率
3.60%
发文量
24
审稿时长
16 weeks
期刊介绍: Structural Dynamics focuses on the recent developments in experimental and theoretical methods and techniques that allow a visualization of the electronic and geometric structural changes in real time of chemical, biological, and condensed-matter systems. The community of scientists and engineers working on structural dynamics in such diverse systems often use similar instrumentation and methods. The journal welcomes articles dealing with fundamental problems of electronic and structural dynamics that are tackled by new methods, such as: Time-resolved X-ray and electron diffraction and scattering, Coherent diffractive imaging, Time-resolved X-ray spectroscopies (absorption, emission, resonant inelastic scattering, etc.), Time-resolved electron energy loss spectroscopy (EELS) and electron microscopy, Time-resolved photoelectron spectroscopies (UPS, XPS, ARPES, etc.), Multidimensional spectroscopies in the infrared, the visible and the ultraviolet, Nonlinear spectroscopies in the VUV, the soft and the hard X-ray domains, Theory and computational methods and algorithms for the analysis and description of structuraldynamics and their associated experimental signals. These new methods are enabled by new instrumentation, such as: X-ray free electron lasers, which provide flux, coherence, and time resolution, New sources of ultrashort electron pulses, New sources of ultrashort vacuum ultraviolet (VUV) to hard X-ray pulses, such as high-harmonic generation (HHG) sources or plasma-based sources, New sources of ultrashort infrared and terahertz (THz) radiation, New detectors for X-rays and electrons, New sample handling and delivery schemes, New computational capabilities.
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