揭示主基二硫代烯化学:三(二)配合物的电子和几何观点。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Heloisa N S Menezes, Henrique C S Junior, Glaucio B Ferreira
{"title":"揭示主基二硫代烯化学:三(二)配合物的电子和几何观点。","authors":"Heloisa N S Menezes, Henrique C S Junior, Glaucio B Ferreira","doi":"10.1007/s00894-025-06417-5","DOIUrl":null,"url":null,"abstract":"<p><strong>Context: </strong>1,3-Dithiola-2-thiona-4,5-dithiolate is a versatile noninnocent ligand with applications in superconductivity, magnetism, and nonlinear optical materials. This study evaluated the tris(dmit) antimony(V) and tin(IV) complexes via modern computational methods. A local energy decomposition analysis of metal‒sulfur bond formation revealed that the distorted geometry of the tris(dmit) complexes in acetonitrile is the most stable conformation for both systems, whereas other conformations remain energetically accessible. The geometrical stability arises from the ionic and soft acid‒base interactions between the highly oxidized cations and thiolated sulfur atoms. State-averaged complete active-space self-consistent field with N-electron valence second-order perturbation theory correction calculations indicated that while the ground states are dominated by a single configuration, the excited state manifold in both systems shows multiconfigurational character, which is relevant for understanding systems with potentially non-innocent ligands. Finally, similarity-transformed equations of motion coupled-cluster calculations successfully reproduced the experimental UV‒Vis spectra of the two complexes in acetonitrile, highlighting the low-energy ligand-to-metal charge-transfer excitations in the tris(dmit) antimony(V) complex. These findings increase the understanding of the electronic structure and stability of tris(dmit) complexes, which can help in understanding potential applications.</p><p><strong>Methods: </strong>The tris(dmit) complexes were computationally investigated via two solvation models: implicit and explicit solvation. All ab initio and DFT wave function calculations were performed via ORCA software version 5.0.3. Model implicit solvation were optimized via the TPSSh/Def2-TZVP level of theory with CPCM used to simulate an acetonitrile medium. AIMD calculations for explicit solvation of the dmit salts were conducted using the GFN2-xTB method with 40 explicit acetonitrile molecules as the solvent at 300 K for a total simulation time of 35.0 ps, a timestep of 0.2 fs and data dumps every 10.0 fs. The final geometries were optimized via an ONIOM approach, with the high-level region set at the R2SCAN-3C method, which included the complexes and the first solvation shell. The low-level region utilized the extended tight-binding (xTB) method to encapsulate the explicitly solvated models, which comprised the remaining solvent molecules. Local energy decomposition (LED) analysis at the DLPNO-CCSD(T)/Def2-TZVP level of theory was utilized to investigate the stability of the complex geometries identified by AIMD. The electronic structures of the complexes were assessed using the SA-CASSCF/NEVPT2/Def2-TZVP method to confirm the multiconfigurational and multireference nature of their electronic structures. Electronic spectra were analyzed using the STEOM-DLPNO-CCSD/Def2-TZVP method, with CPCM used to simulate an acetonitrile medium.</p>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":"192"},"PeriodicalIF":2.1000,"publicationDate":"2025-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Shedding light on main-group dithiolene chemistry: electronic and geometrical perspectives of tris(dmit) complexes.\",\"authors\":\"Heloisa N S Menezes, Henrique C S Junior, Glaucio B Ferreira\",\"doi\":\"10.1007/s00894-025-06417-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Context: </strong>1,3-Dithiola-2-thiona-4,5-dithiolate is a versatile noninnocent ligand with applications in superconductivity, magnetism, and nonlinear optical materials. This study evaluated the tris(dmit) antimony(V) and tin(IV) complexes via modern computational methods. A local energy decomposition analysis of metal‒sulfur bond formation revealed that the distorted geometry of the tris(dmit) complexes in acetonitrile is the most stable conformation for both systems, whereas other conformations remain energetically accessible. The geometrical stability arises from the ionic and soft acid‒base interactions between the highly oxidized cations and thiolated sulfur atoms. State-averaged complete active-space self-consistent field with N-electron valence second-order perturbation theory correction calculations indicated that while the ground states are dominated by a single configuration, the excited state manifold in both systems shows multiconfigurational character, which is relevant for understanding systems with potentially non-innocent ligands. Finally, similarity-transformed equations of motion coupled-cluster calculations successfully reproduced the experimental UV‒Vis spectra of the two complexes in acetonitrile, highlighting the low-energy ligand-to-metal charge-transfer excitations in the tris(dmit) antimony(V) complex. These findings increase the understanding of the electronic structure and stability of tris(dmit) complexes, which can help in understanding potential applications.</p><p><strong>Methods: </strong>The tris(dmit) complexes were computationally investigated via two solvation models: implicit and explicit solvation. All ab initio and DFT wave function calculations were performed via ORCA software version 5.0.3. Model implicit solvation were optimized via the TPSSh/Def2-TZVP level of theory with CPCM used to simulate an acetonitrile medium. AIMD calculations for explicit solvation of the dmit salts were conducted using the GFN2-xTB method with 40 explicit acetonitrile molecules as the solvent at 300 K for a total simulation time of 35.0 ps, a timestep of 0.2 fs and data dumps every 10.0 fs. The final geometries were optimized via an ONIOM approach, with the high-level region set at the R2SCAN-3C method, which included the complexes and the first solvation shell. The low-level region utilized the extended tight-binding (xTB) method to encapsulate the explicitly solvated models, which comprised the remaining solvent molecules. Local energy decomposition (LED) analysis at the DLPNO-CCSD(T)/Def2-TZVP level of theory was utilized to investigate the stability of the complex geometries identified by AIMD. The electronic structures of the complexes were assessed using the SA-CASSCF/NEVPT2/Def2-TZVP method to confirm the multiconfigurational and multireference nature of their electronic structures. Electronic spectra were analyzed using the STEOM-DLPNO-CCSD/Def2-TZVP method, with CPCM used to simulate an acetonitrile medium.</p>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 7\",\"pages\":\"192\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2025-06-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1007/s00894-025-06417-5\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s00894-025-06417-5","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:1,3-二硫代-2-硫代-4,5-二硫代酸酯是一种多用途的非无害配体,在超导、磁性和非线性光学材料中有着广泛的应用。本研究利用现代计算方法对三(二)锑(V)和锡(IV)配合物进行了评价。金属-硫键形成的局部能量分解分析表明,在乙腈中,三(二)配合物的扭曲几何形状是这两种体系中最稳定的构象,而其他构象仍然是能量可达的。几何稳定性源于高氧化阳离子和硫化硫原子之间的离子和软酸碱相互作用。态平均完全主动空间自一致场与n电子价二阶摄动理论校正计算表明,虽然基态是由单一构型主导,但激发态流形在两个系统中都表现出多构型特征,这与理解具有潜在非无配体的系统有关。最后,相似变换运动方程耦合簇计算成功地再现了这两种配合物在乙腈中的实验紫外可见光谱,突出了三(二)锑(V)配合物中低能配体到金属的电荷转移激发。这些发现增加了对tris(dmit)配合物的电子结构和稳定性的理解,有助于了解潜在的应用。方法:采用隐式和显式两种溶剂化模型对三(二)配合物进行了计算研究。所有从头算和DFT波函数计算均通过ORCA 5.0.3版软件进行。通过TPSSh/Def2-TZVP水平的理论优化模型隐式溶剂化,CPCM用于模拟乙腈介质。采用GFN2-xTB方法,以40个显式乙腈分子为溶剂,在300 K下,模拟总时间为35.0 ps,时间步长为0.2 fs,每10.0 fs数据一次。最终的几何形状通过onionm方法进行优化,在R2SCAN-3C方法中设置高级区域,包括配合物和第一溶剂化壳。低能级区域使用扩展紧密结合(xTB)方法封装显式溶剂化模型,其中包括剩余的溶剂分子。利用DLPNO-CCSD(T)/Def2-TZVP理论水平的局部能量分解(LED)分析来研究AIMD识别的复杂几何形状的稳定性。采用SA-CASSCF/NEVPT2/Def2-TZVP方法对配合物的电子结构进行评价,确认其电子结构具有多构型和多参考性质。电子能谱分析采用STEOM-DLPNO-CCSD/Def2-TZVP方法,CPCM用于模拟乙腈介质。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Shedding light on main-group dithiolene chemistry: electronic and geometrical perspectives of tris(dmit) complexes.

Context: 1,3-Dithiola-2-thiona-4,5-dithiolate is a versatile noninnocent ligand with applications in superconductivity, magnetism, and nonlinear optical materials. This study evaluated the tris(dmit) antimony(V) and tin(IV) complexes via modern computational methods. A local energy decomposition analysis of metal‒sulfur bond formation revealed that the distorted geometry of the tris(dmit) complexes in acetonitrile is the most stable conformation for both systems, whereas other conformations remain energetically accessible. The geometrical stability arises from the ionic and soft acid‒base interactions between the highly oxidized cations and thiolated sulfur atoms. State-averaged complete active-space self-consistent field with N-electron valence second-order perturbation theory correction calculations indicated that while the ground states are dominated by a single configuration, the excited state manifold in both systems shows multiconfigurational character, which is relevant for understanding systems with potentially non-innocent ligands. Finally, similarity-transformed equations of motion coupled-cluster calculations successfully reproduced the experimental UV‒Vis spectra of the two complexes in acetonitrile, highlighting the low-energy ligand-to-metal charge-transfer excitations in the tris(dmit) antimony(V) complex. These findings increase the understanding of the electronic structure and stability of tris(dmit) complexes, which can help in understanding potential applications.

Methods: The tris(dmit) complexes were computationally investigated via two solvation models: implicit and explicit solvation. All ab initio and DFT wave function calculations were performed via ORCA software version 5.0.3. Model implicit solvation were optimized via the TPSSh/Def2-TZVP level of theory with CPCM used to simulate an acetonitrile medium. AIMD calculations for explicit solvation of the dmit salts were conducted using the GFN2-xTB method with 40 explicit acetonitrile molecules as the solvent at 300 K for a total simulation time of 35.0 ps, a timestep of 0.2 fs and data dumps every 10.0 fs. The final geometries were optimized via an ONIOM approach, with the high-level region set at the R2SCAN-3C method, which included the complexes and the first solvation shell. The low-level region utilized the extended tight-binding (xTB) method to encapsulate the explicitly solvated models, which comprised the remaining solvent molecules. Local energy decomposition (LED) analysis at the DLPNO-CCSD(T)/Def2-TZVP level of theory was utilized to investigate the stability of the complex geometries identified by AIMD. The electronic structures of the complexes were assessed using the SA-CASSCF/NEVPT2/Def2-TZVP method to confirm the multiconfigurational and multireference nature of their electronic structures. Electronic spectra were analyzed using the STEOM-DLPNO-CCSD/Def2-TZVP method, with CPCM used to simulate an acetonitrile medium.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信