Natividad Bejarano Rengel , Juliana Esteche , Gustavo A. Echeverría , Oscar E. Piro , Mauricio F. Erben , Cintia C. Santiago , Agustín Ponzinibbio
{"title":"6- n -芳基糖苷的构象方面:x射线和振动光谱研究","authors":"Natividad Bejarano Rengel , Juliana Esteche , Gustavo A. Echeverría , Oscar E. Piro , Mauricio F. Erben , Cintia C. Santiago , Agustín Ponzinibbio","doi":"10.1016/j.molstruc.2025.142975","DOIUrl":null,"url":null,"abstract":"<div><div>This study investigates the structural and conformational features of novel 6-N-aryl-galactosides, specifically 4-halo-6-deoxy-1,2:3,4-di-<em>O</em>-isopropylidene-6-N-phenylamino-α-<em><span>d</span></em>-galactopyranosides, using a combination of spectroscopic techniques. Comparative analyses were performed using single-crystal X-ray diffraction, FT-IR, and FT-Raman vibrational spectroscopy to elucidate structural similarities and differences among the derivatives. Two crystallographically independent molecules were observed in the asymmetric unit of the <em>p</em>‑chloro compound, and four in that of the <em>p</em>-fluoro compound, all exhibiting close structural resemblance. Key inter- and intramolecular interactions governing crystal packing and conformational variability were identified. The 6-C substituent displayed notable flexibility in the solid state. Unlike the typical perpendicular orientation in C1-substituted glycosides, the C6-N-galactosides exhibited a planar arrangement of the aromatic and sugar rings. The pyranose ring adopted an °S<sub>2</sub> twist-boat conformation, as confirmed by torsional analysis. These interactions also led to distinct supramolecular assemblies in the <em>p</em>‑chloro and <em>p</em>-fluoro derivatives.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1344 ","pages":"Article 142975"},"PeriodicalIF":4.0000,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Conformational aspects of 6-N-aryl-glycosides: X-ray and vibrational spectroscopic studies\",\"authors\":\"Natividad Bejarano Rengel , Juliana Esteche , Gustavo A. Echeverría , Oscar E. Piro , Mauricio F. Erben , Cintia C. Santiago , Agustín Ponzinibbio\",\"doi\":\"10.1016/j.molstruc.2025.142975\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This study investigates the structural and conformational features of novel 6-N-aryl-galactosides, specifically 4-halo-6-deoxy-1,2:3,4-di-<em>O</em>-isopropylidene-6-N-phenylamino-α-<em><span>d</span></em>-galactopyranosides, using a combination of spectroscopic techniques. Comparative analyses were performed using single-crystal X-ray diffraction, FT-IR, and FT-Raman vibrational spectroscopy to elucidate structural similarities and differences among the derivatives. Two crystallographically independent molecules were observed in the asymmetric unit of the <em>p</em>‑chloro compound, and four in that of the <em>p</em>-fluoro compound, all exhibiting close structural resemblance. Key inter- and intramolecular interactions governing crystal packing and conformational variability were identified. The 6-C substituent displayed notable flexibility in the solid state. Unlike the typical perpendicular orientation in C1-substituted glycosides, the C6-N-galactosides exhibited a planar arrangement of the aromatic and sugar rings. The pyranose ring adopted an °S<sub>2</sub> twist-boat conformation, as confirmed by torsional analysis. These interactions also led to distinct supramolecular assemblies in the <em>p</em>‑chloro and <em>p</em>-fluoro derivatives.</div></div>\",\"PeriodicalId\":16414,\"journal\":{\"name\":\"Journal of Molecular Structure\",\"volume\":\"1344 \",\"pages\":\"Article 142975\"},\"PeriodicalIF\":4.0000,\"publicationDate\":\"2025-06-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Structure\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022286025016485\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Structure","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022286025016485","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
摘要
本研究结合光谱技术研究了新型6- n -芳基半乳糖苷,特别是4-卤-6-脱氧-1,2:3,4-二- o-异丙基-6- n -苯基氨基-α-d-半乳糖苷的结构和构象特征。利用单晶x射线衍射、傅里叶变换红外光谱和傅里叶变换拉曼振动光谱进行了比较分析,以阐明衍生物之间的结构异同。在对氯化合物的不对称单元中观察到两个晶体独立的分子,在对氟化合物的不对称单元中观察到四个分子,它们都表现出非常相似的结构。确定了控制晶体堆积和构象变异性的关键分子间和分子内相互作用。6-C取代基在固态中表现出明显的柔韧性。与c1取代的半乳糖苷不同,c6 - n -半乳糖苷的芳香环和糖环呈平面排列。旋扭分析证实吡喃糖环为S2°扭船构象。这些相互作用还导致了对氯和对氟衍生物中不同的超分子组装。
Conformational aspects of 6-N-aryl-glycosides: X-ray and vibrational spectroscopic studies
This study investigates the structural and conformational features of novel 6-N-aryl-galactosides, specifically 4-halo-6-deoxy-1,2:3,4-di-O-isopropylidene-6-N-phenylamino-α-d-galactopyranosides, using a combination of spectroscopic techniques. Comparative analyses were performed using single-crystal X-ray diffraction, FT-IR, and FT-Raman vibrational spectroscopy to elucidate structural similarities and differences among the derivatives. Two crystallographically independent molecules were observed in the asymmetric unit of the p‑chloro compound, and four in that of the p-fluoro compound, all exhibiting close structural resemblance. Key inter- and intramolecular interactions governing crystal packing and conformational variability were identified. The 6-C substituent displayed notable flexibility in the solid state. Unlike the typical perpendicular orientation in C1-substituted glycosides, the C6-N-galactosides exhibited a planar arrangement of the aromatic and sugar rings. The pyranose ring adopted an °S2 twist-boat conformation, as confirmed by torsional analysis. These interactions also led to distinct supramolecular assemblies in the p‑chloro and p-fluoro derivatives.
期刊介绍:
The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including:
• Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.)
• Chemical intermediates
• Molecules in excited states
• Biological molecules
• Polymers.
The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example:
• Infrared spectroscopy (mid, far, near)
• Raman spectroscopy and non-linear Raman methods (CARS, etc.)
• Electronic absorption spectroscopy
• Optical rotatory dispersion and circular dichroism
• Fluorescence and phosphorescence techniques
• Electron spectroscopies (PES, XPS), EXAFS, etc.
• Microwave spectroscopy
• Electron diffraction
• NMR and ESR spectroscopies
• Mössbauer spectroscopy
• X-ray crystallography
• Charge Density Analyses
• Computational Studies (supplementing experimental methods)
We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.