蛋白质和分子设计的预训练语言模型

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Erdong Zhang, Calvin Yu-Chian Chen, Zilin Pan, Zequan Yao, Tiejun Dong, Guan-Xing Chen, Tingwen Deng, Shiwei Chen
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引用次数: 0

摘要

预训练语言模型(PLMs)最近成为一种强大的工具,不仅在自然语言理解方面表现出色,而且在生物研究领域也表现出色。plm的优势在于它们能够利用生物序列和自然语言之间的结构相似性。plm为蛋白质研究和药物设计应用提供了新颖的解决方案。通过对大量未标记的生物序列进行预训练,然后对特定任务进行微调,PLMs已经取得了显著的成果。为了总结PLMs在生物学研究中的发展前景,本文整合了典型PLMs和常用数据集,展示了PLMs在预测和生成任务中的潜力和应用前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Pre-trained Language Models for Protein and Molecular Design
Pre-trained Language Models (PLMs) have recently emerged as a powerful tool, showcasing exceptional performance not just in natural language understanding but also in the realm of biological research. The advantage of PLMs lies in their ability to leverage the structural similarity between biological sequences and natural language. PLMs offer novel solutions for protein research and drug design applications. By pre-training on extensive unlabeled biological sequences and then fine-tuning for specific tasks, PLMs have delivered remarkable results. To summarize the growing landscape of PLMs in biological research, this paper integrates exemplary PLMs and common datasets, demonstrating the potential and application prospects of PLMs in prediction and generation tasks.
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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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