{"title":"无体外纯化的微生物间高效大尺寸DNA传递的通用方法。","authors":"Shinya Kaneko , Hiromi Fukushima , Misako Nakahama , Kenji Tsuge , Jun Ishii , Yasunori Aizawa , Mitsuhiro Itaya , Akihiko Kondo","doi":"10.1016/j.jmb.2025.169289","DOIUrl":null,"url":null,"abstract":"<div><div>Purified DNA plasmids traditionally used for microbial transformation have been supplanted by extracellular plasmids released via host bacterial lysis, offering an alternative approach for DNA-plasmid delivery. Specifically, shuttle vector plasmids liberated from host <em>Bacillus subtilis</em> were directly employed for the transformation of chemically competent cells <em>Escherichia coli</em>, eliminating the need for biochemical purification. This unconventional DNA delivery technique, referred to as ’<u>Ce</u>ll <u>Ly</u>sis Technology to provide <u>T</u>ransformable <u>E</u>xtra-cellular <u>D</u>NA; CELyTED’, has been successfully adapted for the transformation of microorganism <em>Saccharomyces cerevisiae</em> as well. The protocol includes optimized conditions for efficient cell lysis of the donor host cells. Notably, ’ CELyTED ’ enables the introduction of large-sized DNA plasmids exceeding 50 kb into target microorganisms mitigating the potential adverse effects of physical shearing during the purification process. This simplicity in the delivery protocol makes it versatile for both prokaryotic and eukaryotic microorganisms, establishing a fundamental platform in the synthetic genome field. Our study demonstrates the feasibility of introducing large DNA plasmids into cells <em>E. coli</em> and <em>S. cerevisiae</em> using the lysate of donor host cells, showcasing the potential of ‘CELyTED ’ as a streamlined approach in genetic transformation methodologies.</div></div>","PeriodicalId":369,"journal":{"name":"Journal of Molecular Biology","volume":"437 17","pages":"Article 169289"},"PeriodicalIF":4.5000,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Versatile Methodology for Efficient Large-sized DNA Delivery Between Microorganisms Without In vitro Purification\",\"authors\":\"Shinya Kaneko , Hiromi Fukushima , Misako Nakahama , Kenji Tsuge , Jun Ishii , Yasunori Aizawa , Mitsuhiro Itaya , Akihiko Kondo\",\"doi\":\"10.1016/j.jmb.2025.169289\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Purified DNA plasmids traditionally used for microbial transformation have been supplanted by extracellular plasmids released via host bacterial lysis, offering an alternative approach for DNA-plasmid delivery. Specifically, shuttle vector plasmids liberated from host <em>Bacillus subtilis</em> were directly employed for the transformation of chemically competent cells <em>Escherichia coli</em>, eliminating the need for biochemical purification. This unconventional DNA delivery technique, referred to as ’<u>Ce</u>ll <u>Ly</u>sis Technology to provide <u>T</u>ransformable <u>E</u>xtra-cellular <u>D</u>NA; CELyTED’, has been successfully adapted for the transformation of microorganism <em>Saccharomyces cerevisiae</em> as well. The protocol includes optimized conditions for efficient cell lysis of the donor host cells. Notably, ’ CELyTED ’ enables the introduction of large-sized DNA plasmids exceeding 50 kb into target microorganisms mitigating the potential adverse effects of physical shearing during the purification process. This simplicity in the delivery protocol makes it versatile for both prokaryotic and eukaryotic microorganisms, establishing a fundamental platform in the synthetic genome field. Our study demonstrates the feasibility of introducing large DNA plasmids into cells <em>E. coli</em> and <em>S. cerevisiae</em> using the lysate of donor host cells, showcasing the potential of ‘CELyTED ’ as a streamlined approach in genetic transformation methodologies.</div></div>\",\"PeriodicalId\":369,\"journal\":{\"name\":\"Journal of Molecular Biology\",\"volume\":\"437 17\",\"pages\":\"Article 169289\"},\"PeriodicalIF\":4.5000,\"publicationDate\":\"2025-06-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022283625003559\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022283625003559","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Versatile Methodology for Efficient Large-sized DNA Delivery Between Microorganisms Without In vitro Purification
Purified DNA plasmids traditionally used for microbial transformation have been supplanted by extracellular plasmids released via host bacterial lysis, offering an alternative approach for DNA-plasmid delivery. Specifically, shuttle vector plasmids liberated from host Bacillus subtilis were directly employed for the transformation of chemically competent cells Escherichia coli, eliminating the need for biochemical purification. This unconventional DNA delivery technique, referred to as ’Cell Lysis Technology to provide Transformable Extra-cellular DNA; CELyTED’, has been successfully adapted for the transformation of microorganism Saccharomyces cerevisiae as well. The protocol includes optimized conditions for efficient cell lysis of the donor host cells. Notably, ’ CELyTED ’ enables the introduction of large-sized DNA plasmids exceeding 50 kb into target microorganisms mitigating the potential adverse effects of physical shearing during the purification process. This simplicity in the delivery protocol makes it versatile for both prokaryotic and eukaryotic microorganisms, establishing a fundamental platform in the synthetic genome field. Our study demonstrates the feasibility of introducing large DNA plasmids into cells E. coli and S. cerevisiae using the lysate of donor host cells, showcasing the potential of ‘CELyTED ’ as a streamlined approach in genetic transformation methodologies.
期刊介绍:
Journal of Molecular Biology (JMB) provides high quality, comprehensive and broad coverage in all areas of molecular biology. The journal publishes original scientific research papers that provide mechanistic and functional insights and report a significant advance to the field. The journal encourages the submission of multidisciplinary studies that use complementary experimental and computational approaches to address challenging biological questions.
Research areas include but are not limited to: Biomolecular interactions, signaling networks, systems biology; Cell cycle, cell growth, cell differentiation; Cell death, autophagy; Cell signaling and regulation; Chemical biology; Computational biology, in combination with experimental studies; DNA replication, repair, and recombination; Development, regenerative biology, mechanistic and functional studies of stem cells; Epigenetics, chromatin structure and function; Gene expression; Membrane processes, cell surface proteins and cell-cell interactions; Methodological advances, both experimental and theoretical, including databases; Microbiology, virology, and interactions with the host or environment; Microbiota mechanistic and functional studies; Nuclear organization; Post-translational modifications, proteomics; Processing and function of biologically important macromolecules and complexes; Molecular basis of disease; RNA processing, structure and functions of non-coding RNAs, transcription; Sorting, spatiotemporal organization, trafficking; Structural biology; Synthetic biology; Translation, protein folding, chaperones, protein degradation and quality control.