细菌基因组编码ParMs。

IF 4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Samson Ali, Adrian Koh, David Popp, Kotaro Tanaka, Yoshihito Kitaoku, Naoyuki Miyazaki, Kenji Iwasaki, Kaoru Mitsuoka, Robert C Robinson, Akihiro Narita
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引用次数: 0

摘要

parm一般存在于低拷贝数质粒上,有助于质粒分离和稳定遗传。我们进行了生物信息学分析,表明ParM基因不仅局限于质粒,而且偶尔也会在基因组上发现。本文报道了从hafniense Desulfitobacterium (Dh-cParM1)和Clostridium botulinum (Cb-cParM)的基因组中发现并鉴定了两条染色体编码的ParMs (cParMs)。这两种cparm都形成细丝,表现出核苷酸水解,并具有典型的ParM亚基结构。Dh-cParM1形成单丝和紧密耦合的双丝,在6种脱硫菌中的5种染色体上高度保守。有趣的是,这些细菌没有携带质粒的报道。Cb-cParM具有独特的性能。在核苷酸水解和Pi释放后,其丝状物保持稳定,其ParR, (Cb-cParR)不影响Cb-cParM聚合的初始阶段,而表现出成熟丝状物解聚因子的特性。这些结果表明,功能性聚合ParM可以在基因组上编码,这表明ParM的作用可能扩展到质粒分离之外的其他功能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bacterial genome encoded ParMs.

ParMs generally exist on low copy number plasmids where they contribute to plasmid segregation and stable inheritance. We carried out bioinformatics analysis, which indicated that ParM genes are not only confined to plasmids but are also occasionally found on genomes. Here we report the discovery and characterization of two chromosome encoded ParMs (cParMs) from the genomes of Desulfitobacterium hafniense (Dh-cParM1) and Clostridium botulinum (Cb-cParM). Both cParMs form filaments, exhibit nucleotide hydrolysis, and possess characteristic ParM subunit structures. Dh-cParM1 forms single and tightly coupled double filaments and is highly conserved on the chromosomes of five of six Desulfitobacterium species. Interestingly, these bacteria have not been reported to harbour plasmids. Cb-cParM possesses unique properties. Its filaments were stable after nucleotide hydrolysis and Pi release, and its ParR, (Cb-cParR) did not affect the initial phase of Cb-cParM polymerization but displayed properties of a depolymerization factor for mature filaments. These results indicate functional, polymerizing ParMs can be encoded on genomes, suggesting that ParM roles may extend to other functions beyond plasmid segregation.

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来源期刊
Journal of Biological Chemistry
Journal of Biological Chemistry Biochemistry, Genetics and Molecular Biology-Biochemistry
自引率
4.20%
发文量
1233
期刊介绍: The Journal of Biological Chemistry welcomes high-quality science that seeks to elucidate the molecular and cellular basis of biological processes. Papers published in JBC can therefore fall under the umbrellas of not only biological chemistry, chemical biology, or biochemistry, but also allied disciplines such as biophysics, systems biology, RNA biology, immunology, microbiology, neurobiology, epigenetics, computational biology, ’omics, and many more. The outcome of our focus on papers that contribute novel and important mechanistic insights, rather than on a particular topic area, is that JBC is truly a melting pot for scientists across disciplines. In addition, JBC welcomes papers that describe methods that will help scientists push their biochemical inquiries forward and resources that will be of use to the research community.
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