Daniel Spitzl, Markus Mergen, Ulrike Bauer, Friederike Jungmann, Keno K Bressem, Felix Busch, Marcus R Makowski, Lisa C Adams, Florian T Gassert
{"title":"利用大型语言模型从MRI报告中准确分类肝脏病变。","authors":"Daniel Spitzl, Markus Mergen, Ulrike Bauer, Friederike Jungmann, Keno K Bressem, Felix Busch, Marcus R Makowski, Lisa C Adams, Florian T Gassert","doi":"10.1016/j.csbj.2025.05.019","DOIUrl":null,"url":null,"abstract":"<p><strong>Background & aims: </strong>The rapid advancement of large language models (LLMs) has generated interest in their potential integration in clinical workflows. However, their effectiveness in interpreting complex (imaging) reports remains underexplored and has at times yielded suboptimal results. This study aims to assess the capability of state-of-the-art LLMs to classify liver lesions based solely on textual descriptions from MRI reports, challenging the models to interpret nuanced medical language and diagnostic criteria.</p><p><strong>Methods: </strong>We evaluated multiple LLMs, including GPT-4o, Deepseek V3, Claude 3.5 Sonnet, and Gemini 2.0 Flash, on a physician-generated fictitious dataset of 88 MRI reports designed to resemble real clinical radiology documentation. The dataset included a representative spectrum of common liver lesions, such as hepatocellular carcinoma, cholangiocarcinoma, hemangiomas, metastases, and focal nodular hyperplasia. Model performance was assessed using micro and macro F1-scores benchmarked against ground truth labels.</p><p><strong>Results: </strong>Claude 3.5 Sonnet demonstrated the highest diagnostic accuracy among the evaluated models, achieving a micro F1-score of 0.91, outperforming other LLMs in lesion classification.</p><p><strong>Conclusion: </strong>These findings highlight the feasibility of LLMs for text-based diagnostic support, particularly in resource-limited or high-volume clinical settings. While LLMs show promise in medical diagnostics, further validation through prospective studies is necessary to ensure reliable clinical integration. The study emphasizes the importance of rigorous benchmarking to assess model performance comprehensively.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"2139-2146"},"PeriodicalIF":4.4000,"publicationDate":"2025-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12158552/pdf/","citationCount":"0","resultStr":"{\"title\":\"Leveraging large language models for accurate classification of liver lesions from MRI reports.\",\"authors\":\"Daniel Spitzl, Markus Mergen, Ulrike Bauer, Friederike Jungmann, Keno K Bressem, Felix Busch, Marcus R Makowski, Lisa C Adams, Florian T Gassert\",\"doi\":\"10.1016/j.csbj.2025.05.019\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background & aims: </strong>The rapid advancement of large language models (LLMs) has generated interest in their potential integration in clinical workflows. However, their effectiveness in interpreting complex (imaging) reports remains underexplored and has at times yielded suboptimal results. This study aims to assess the capability of state-of-the-art LLMs to classify liver lesions based solely on textual descriptions from MRI reports, challenging the models to interpret nuanced medical language and diagnostic criteria.</p><p><strong>Methods: </strong>We evaluated multiple LLMs, including GPT-4o, Deepseek V3, Claude 3.5 Sonnet, and Gemini 2.0 Flash, on a physician-generated fictitious dataset of 88 MRI reports designed to resemble real clinical radiology documentation. The dataset included a representative spectrum of common liver lesions, such as hepatocellular carcinoma, cholangiocarcinoma, hemangiomas, metastases, and focal nodular hyperplasia. Model performance was assessed using micro and macro F1-scores benchmarked against ground truth labels.</p><p><strong>Results: </strong>Claude 3.5 Sonnet demonstrated the highest diagnostic accuracy among the evaluated models, achieving a micro F1-score of 0.91, outperforming other LLMs in lesion classification.</p><p><strong>Conclusion: </strong>These findings highlight the feasibility of LLMs for text-based diagnostic support, particularly in resource-limited or high-volume clinical settings. While LLMs show promise in medical diagnostics, further validation through prospective studies is necessary to ensure reliable clinical integration. The study emphasizes the importance of rigorous benchmarking to assess model performance comprehensively.</p>\",\"PeriodicalId\":10715,\"journal\":{\"name\":\"Computational and structural biotechnology journal\",\"volume\":\"27 \",\"pages\":\"2139-2146\"},\"PeriodicalIF\":4.4000,\"publicationDate\":\"2025-05-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12158552/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and structural biotechnology journal\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/j.csbj.2025.05.019\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.05.019","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Leveraging large language models for accurate classification of liver lesions from MRI reports.
Background & aims: The rapid advancement of large language models (LLMs) has generated interest in their potential integration in clinical workflows. However, their effectiveness in interpreting complex (imaging) reports remains underexplored and has at times yielded suboptimal results. This study aims to assess the capability of state-of-the-art LLMs to classify liver lesions based solely on textual descriptions from MRI reports, challenging the models to interpret nuanced medical language and diagnostic criteria.
Methods: We evaluated multiple LLMs, including GPT-4o, Deepseek V3, Claude 3.5 Sonnet, and Gemini 2.0 Flash, on a physician-generated fictitious dataset of 88 MRI reports designed to resemble real clinical radiology documentation. The dataset included a representative spectrum of common liver lesions, such as hepatocellular carcinoma, cholangiocarcinoma, hemangiomas, metastases, and focal nodular hyperplasia. Model performance was assessed using micro and macro F1-scores benchmarked against ground truth labels.
Results: Claude 3.5 Sonnet demonstrated the highest diagnostic accuracy among the evaluated models, achieving a micro F1-score of 0.91, outperforming other LLMs in lesion classification.
Conclusion: These findings highlight the feasibility of LLMs for text-based diagnostic support, particularly in resource-limited or high-volume clinical settings. While LLMs show promise in medical diagnostics, further validation through prospective studies is necessary to ensure reliable clinical integration. The study emphasizes the importance of rigorous benchmarking to assess model performance comprehensively.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology