上位性绿胡子等位基因的变化引起了实体类石头剪刀布绿胡子竞争的结构域转移。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Jibeom Choi
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引用次数: 0

摘要

具有相容的TraA受体的黏菌可以交换位于外膜上的物质。这种外膜交换(OME)是帮助克隆体的有效策略。然而,如果OME发生在携带不同sitAI谱的细胞之间,转移的毒素可能会伤害受体。虽然traA和sitAI可以被归类为绿须基因,但sitAI的功能严重依赖于traA。换句话说,没有OME, sitAI的伤害作用就失效了。因此,我将traA和sitAI分别命名为epistatic和hyhytic绿胡子基因,并提出了一个依赖于握手的石头剪刀布(RPSL)模型。模拟结果表明,物种多样化的进化压力与环境有关。侵略者、易受影响者和吃白食者之间的竞争由实体的sitAI技能决定,表现出循环优势,但也涉及到发散动力的可能性。易感群体通过改变上位性的绿须traA等位基因,可以避免入侵者的入侵,建立RPSL竞争的另一个域(域转移)。此外,我从上位性和实存性绿胡子等位基因的相容性数学分析了黏菌之间的预期亲缘关系。它不仅可以解释黏菌traA和sitAI等位基因的多态性,而且还可以扩展到研究融合性癌细胞的社会相互作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Changes in epistatic green-beard alleles induce domain shift in hypostatic rock-paper-scissors-like green-beard competition.

Myxobacteria with compatible TraA receptors can exchange materials located on the outer membrane. Such outer membrane exchange (OME) is an efficient strategy to help clonemates. If OME occurs between cells carrying different sitAI repertoires, however, transferred toxins may harm the recipient. While traA and sitAI can be categorized as green-beard genes, the functionality of sitAI is heavily reliant on traA. In other words, the harming effect of the sitAI is invalidated without OME. Hence, I termed traA and sitAI epistatic and hypostatic green-beard genes, respectively, and proposed a handshake-dependent rock-paper-scissors-like (RPSL) model. The simulation results imply that evolutionary pressure for traA diversification is context-dependent. The competition among aggressors, susceptibles, and freeloaders determined by hypostatic sitAI repertoire exhibits cyclic dominance, yet involves the possibility of divergent dynamics. By changing the epistatic green-beard traA alleles, susceptibles can avoid invasion of the aggressors, establishing another domain of the RPSL competition (domain shift). Furthermore, I mathematically analyzed the expected relatedness between myxobacteria from the compatibility of epistatic and hypostatic green-beard alleles. Not only can it explain the polymorphism of myxobacterial traA and sitAI alleles, but the model can also be expanded to investigate the social interactions of fusogenic cancer cells.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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