{"title":"上位性绿胡子等位基因的变化引起了实体类石头剪刀布绿胡子竞争的结构域转移。","authors":"Jibeom Choi","doi":"10.1038/s41540-025-00541-x","DOIUrl":null,"url":null,"abstract":"<p><p>Myxobacteria with compatible TraA receptors can exchange materials located on the outer membrane. Such outer membrane exchange (OME) is an efficient strategy to help clonemates. If OME occurs between cells carrying different sitAI repertoires, however, transferred toxins may harm the recipient. While traA and sitAI can be categorized as green-beard genes, the functionality of sitAI is heavily reliant on traA. In other words, the harming effect of the sitAI is invalidated without OME. Hence, I termed traA and sitAI epistatic and hypostatic green-beard genes, respectively, and proposed a handshake-dependent rock-paper-scissors-like (RPSL) model. The simulation results imply that evolutionary pressure for traA diversification is context-dependent. The competition among aggressors, susceptibles, and freeloaders determined by hypostatic sitAI repertoire exhibits cyclic dominance, yet involves the possibility of divergent dynamics. By changing the epistatic green-beard traA alleles, susceptibles can avoid invasion of the aggressors, establishing another domain of the RPSL competition (domain shift). Furthermore, I mathematically analyzed the expected relatedness between myxobacteria from the compatibility of epistatic and hypostatic green-beard alleles. Not only can it explain the polymorphism of myxobacterial traA and sitAI alleles, but the model can also be expanded to investigate the social interactions of fusogenic cancer cells.</p>","PeriodicalId":19345,"journal":{"name":"NPJ Systems Biology and Applications","volume":"11 1","pages":"61"},"PeriodicalIF":3.5000,"publicationDate":"2025-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12145440/pdf/","citationCount":"0","resultStr":"{\"title\":\"Changes in epistatic green-beard alleles induce domain shift in hypostatic rock-paper-scissors-like green-beard competition.\",\"authors\":\"Jibeom Choi\",\"doi\":\"10.1038/s41540-025-00541-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Myxobacteria with compatible TraA receptors can exchange materials located on the outer membrane. Such outer membrane exchange (OME) is an efficient strategy to help clonemates. If OME occurs between cells carrying different sitAI repertoires, however, transferred toxins may harm the recipient. While traA and sitAI can be categorized as green-beard genes, the functionality of sitAI is heavily reliant on traA. In other words, the harming effect of the sitAI is invalidated without OME. Hence, I termed traA and sitAI epistatic and hypostatic green-beard genes, respectively, and proposed a handshake-dependent rock-paper-scissors-like (RPSL) model. The simulation results imply that evolutionary pressure for traA diversification is context-dependent. The competition among aggressors, susceptibles, and freeloaders determined by hypostatic sitAI repertoire exhibits cyclic dominance, yet involves the possibility of divergent dynamics. By changing the epistatic green-beard traA alleles, susceptibles can avoid invasion of the aggressors, establishing another domain of the RPSL competition (domain shift). Furthermore, I mathematically analyzed the expected relatedness between myxobacteria from the compatibility of epistatic and hypostatic green-beard alleles. Not only can it explain the polymorphism of myxobacterial traA and sitAI alleles, but the model can also be expanded to investigate the social interactions of fusogenic cancer cells.</p>\",\"PeriodicalId\":19345,\"journal\":{\"name\":\"NPJ Systems Biology and Applications\",\"volume\":\"11 1\",\"pages\":\"61\"},\"PeriodicalIF\":3.5000,\"publicationDate\":\"2025-06-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12145440/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"NPJ Systems Biology and Applications\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1038/s41540-025-00541-x\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"NPJ Systems Biology and Applications","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1038/s41540-025-00541-x","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
Changes in epistatic green-beard alleles induce domain shift in hypostatic rock-paper-scissors-like green-beard competition.
Myxobacteria with compatible TraA receptors can exchange materials located on the outer membrane. Such outer membrane exchange (OME) is an efficient strategy to help clonemates. If OME occurs between cells carrying different sitAI repertoires, however, transferred toxins may harm the recipient. While traA and sitAI can be categorized as green-beard genes, the functionality of sitAI is heavily reliant on traA. In other words, the harming effect of the sitAI is invalidated without OME. Hence, I termed traA and sitAI epistatic and hypostatic green-beard genes, respectively, and proposed a handshake-dependent rock-paper-scissors-like (RPSL) model. The simulation results imply that evolutionary pressure for traA diversification is context-dependent. The competition among aggressors, susceptibles, and freeloaders determined by hypostatic sitAI repertoire exhibits cyclic dominance, yet involves the possibility of divergent dynamics. By changing the epistatic green-beard traA alleles, susceptibles can avoid invasion of the aggressors, establishing another domain of the RPSL competition (domain shift). Furthermore, I mathematically analyzed the expected relatedness between myxobacteria from the compatibility of epistatic and hypostatic green-beard alleles. Not only can it explain the polymorphism of myxobacterial traA and sitAI alleles, but the model can also be expanded to investigate the social interactions of fusogenic cancer cells.
期刊介绍:
npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology.
We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.