Marimuthu Sangavi , Marimuthu Mohana , Ray J. Butcher , Colin D. McMillen
{"title":"1:1 5-氟胞嘧啶-4-羟基苯甲醛共晶的晶体工程:来自x射线晶体学和Hirshfeld分析的见解。","authors":"Marimuthu Sangavi , Marimuthu Mohana , Ray J. Butcher , Colin D. McMillen","doi":"10.1107/S2056989025004463","DOIUrl":null,"url":null,"abstract":"<div><div>The cocrystal of 5-fluorocytosine and 4-hydroxybenzaldehyde (1/1), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub>, crystallizes in the monoclinic <em>P</em>2<sub>1</sub>/<em>c</em> space group. The crystal structure features a robust supramolecular network stabilized by N—H⋯O, N—H⋯N, O—H⋯O, C—H⋯O and C–H⋯F hydrogen bonds, forming diverse ring motifs including <em>R</em><sub>2</sub><sup>2</sup>(8), <em>R</em><sub>4</sub><sup>4</sup>(22), <em>R</em><sub>6</sub><sup>6</sup>(32), and <em>R</em><sub>8</sub><sup>8</sup>(34). Additional C—F⋯π interactions contribute to the crystal cohesion. Hirshfeld surface analysis reveals that O⋯H/H⋯O contacts dominate the intermolecular interactions, emphasizing the key role of hydrogen bonding in the crystal packing.</div></div><div><div>The 1:1 cocrystal of 5-fluorocytosine (5FC) and 4-hydroxybenzaldehyde (4HB), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub> has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic <em>P</em>2<sub>1</sub>/<em>c</em> space group. A robust supramolecular architecture is stabilized by N—H⋯O, N—H⋯N, C—H⋯O and C—H⋯F hydrogen bonds, forming <em>R</em><sub>2</sub><sup>2</sup>(8), <em>R</em><sub>4</sub><sup>4</sup>(22), <em>R</em><sub>6</sub><sup>6</sup>(32), and <em>R</em><sub>8</sub><sup>8</sup>(34) ring motifs. The N—H⋯O and N—H⋯N hydrogen bonds form strong directional interactions, contributing to the <em>R</em><sub>2</sub><sup>2</sup>(8) and <em>R</em><sub>8</sub><sup>8</sup>(34) motifs through dimeric and extended ring structures. O—H⋯O interactions link 5FC and 4HB molecules, generating an <em>R</em><sub>6</sub><sup>6</sup>(32) ring that enhances the packing. Weaker C—H⋯F bonds help form the <em>R</em><sub>4</sub><sup>4</sup>(22) tetrameric motif, supporting the overall three-dimensional supramolecular framework. Additionally, C—F⋯π interactions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 6","pages":"Pages 549-553"},"PeriodicalIF":0.6000,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis\",\"authors\":\"Marimuthu Sangavi , Marimuthu Mohana , Ray J. Butcher , Colin D. McMillen\",\"doi\":\"10.1107/S2056989025004463\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The cocrystal of 5-fluorocytosine and 4-hydroxybenzaldehyde (1/1), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub>, crystallizes in the monoclinic <em>P</em>2<sub>1</sub>/<em>c</em> space group. The crystal structure features a robust supramolecular network stabilized by N—H⋯O, N—H⋯N, O—H⋯O, C—H⋯O and C–H⋯F hydrogen bonds, forming diverse ring motifs including <em>R</em><sub>2</sub><sup>2</sup>(8), <em>R</em><sub>4</sub><sup>4</sup>(22), <em>R</em><sub>6</sub><sup>6</sup>(32), and <em>R</em><sub>8</sub><sup>8</sup>(34). Additional C—F⋯π interactions contribute to the crystal cohesion. Hirshfeld surface analysis reveals that O⋯H/H⋯O contacts dominate the intermolecular interactions, emphasizing the key role of hydrogen bonding in the crystal packing.</div></div><div><div>The 1:1 cocrystal of 5-fluorocytosine (5FC) and 4-hydroxybenzaldehyde (4HB), C<sub>4</sub>H<sub>4</sub>FN<sub>3</sub>O·C<sub>7</sub>H<sub>6</sub>O<sub>2</sub> has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic <em>P</em>2<sub>1</sub>/<em>c</em> space group. A robust supramolecular architecture is stabilized by N—H⋯O, N—H⋯N, C—H⋯O and C—H⋯F hydrogen bonds, forming <em>R</em><sub>2</sub><sup>2</sup>(8), <em>R</em><sub>4</sub><sup>4</sup>(22), <em>R</em><sub>6</sub><sup>6</sup>(32), and <em>R</em><sub>8</sub><sup>8</sup>(34) ring motifs. The N—H⋯O and N—H⋯N hydrogen bonds form strong directional interactions, contributing to the <em>R</em><sub>2</sub><sup>2</sup>(8) and <em>R</em><sub>8</sub><sup>8</sup>(34) motifs through dimeric and extended ring structures. O—H⋯O interactions link 5FC and 4HB molecules, generating an <em>R</em><sub>6</sub><sup>6</sup>(32) ring that enhances the packing. Weaker C—H⋯F bonds help form the <em>R</em><sub>4</sub><sup>4</sup>(22) tetrameric motif, supporting the overall three-dimensional supramolecular framework. Additionally, C—F⋯π interactions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.</div></div>\",\"PeriodicalId\":7367,\"journal\":{\"name\":\"Acta Crystallographica Section E: Crystallographic Communications\",\"volume\":\"81 6\",\"pages\":\"Pages 549-553\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2025-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Crystallographica Section E: Crystallographic Communications\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/org/science/article/pii/S2056989025000891\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"CRYSTALLOGRAPHY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section E: Crystallographic Communications","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2056989025000891","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CRYSTALLOGRAPHY","Score":null,"Total":0}
Crystal engineering of a 1:1 5-fluorocytosine–4-hydroxybenzaldehyde cocrystal: insights from X-ray crystallography and Hirshfeld analysis
The cocrystal of 5-fluorocytosine and 4-hydroxybenzaldehyde (1/1), C4H4FN3O·C7H6O2, crystallizes in the monoclinic P21/c space group. The crystal structure features a robust supramolecular network stabilized by N—H⋯O, N—H⋯N, O—H⋯O, C—H⋯O and C–H⋯F hydrogen bonds, forming diverse ring motifs including R22(8), R44(22), R66(32), and R88(34). Additional C—F⋯π interactions contribute to the crystal cohesion. Hirshfeld surface analysis reveals that O⋯H/H⋯O contacts dominate the intermolecular interactions, emphasizing the key role of hydrogen bonding in the crystal packing.
The 1:1 cocrystal of 5-fluorocytosine (5FC) and 4-hydroxybenzaldehyde (4HB), C4H4FN3O·C7H6O2 has been synthesized and its structure characterized by single-crystal X-ray diffraction and Hirshfeld surface analysis. The compound crystallizes in the monoclinic P21/c space group. A robust supramolecular architecture is stabilized by N—H⋯O, N—H⋯N, C—H⋯O and C—H⋯F hydrogen bonds, forming R22(8), R44(22), R66(32), and R88(34) ring motifs. The N—H⋯O and N—H⋯N hydrogen bonds form strong directional interactions, contributing to the R22(8) and R88(34) motifs through dimeric and extended ring structures. O—H⋯O interactions link 5FC and 4HB molecules, generating an R66(32) ring that enhances the packing. Weaker C—H⋯F bonds help form the R44(22) tetrameric motif, supporting the overall three-dimensional supramolecular framework. Additionally, C—F⋯π interactions between the fluorine atom and the aromatic ring add further to the crystal cohesion. Hirshfeld surface analysis and two-dimensional fingerprint plots confirm that O⋯H/H⋯O contacts are the most significant, highlighting the central role of hydrogen bonding in the stability and organization of the crystal structure.
期刊介绍:
Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.