{"title":"DSC2作为局部晚期喉部和下咽鳞状细胞癌诱导化疗敏感性的关键生物标志物的鉴定","authors":"Qianyue Yang, Jiayi Liu, Zhiwei Lin, Shuang Liu, Zhaoming Hu, Xiaowen Zhang, Baoqing Sun","doi":"10.1021/acs.jcim.5c00557","DOIUrl":null,"url":null,"abstract":"<p><p>Patients with locally advanced laryngeal and hypopharyngeal squamous cell carcinoma (LA-LHSCC) urgently need precise treatment strategies to improve the prognosis due to severe laryngeal functional impairment following traditional surgery and chemoradiotherapy. This study focuses on the mechanism of sensitivity to induction chemotherapy (IC), integrating the GSE184072 and TCGA-HNSC data sets to screen for differentially expressed genes (DEGs). Combining weighted gene coexpression network analysis (WGCNA) and machine learning methods, including MCC, MCODE, LASSO, SVM-RFE, and Random Forest (RF), the core gene DSC2 (Desmocollin-2) was identified. The results show that DSC2 is significantly highly expressed in the IC-sensitive group with a receiver operating characteristic (ROC) curve area under the curve (AUC) of 0.9111, indicating its high predictive efficacy as a biomarker. Immune infiltration analysis further revealed a significant correlation between DSC2 and the infiltration levels of immune cells such as M1 macrophages, suggesting its potential to influence IC sensitivity by regulating apoptosis and the immune microenvironment. Furthermore, the TCGA clinical data validated the correlation between DSC2 expression and patient survival rates. Our study is the first to establish DSC2 as a pivotal biomarker for IC sensitivity in LA-LHSCC patients, offering a novel avenue for the development of targeted therapeutic strategies and personalized diagnosis and treatment.</p>","PeriodicalId":44,"journal":{"name":"Journal of Chemical Information and Modeling ","volume":" ","pages":"5899-5911"},"PeriodicalIF":5.3000,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of DSC2 as a Key Biomarker for Induction Chemotherapy Sensitivity in Locally Advanced Laryngeal and Hypopharyngeal Squamous Cell Carcinoma.\",\"authors\":\"Qianyue Yang, Jiayi Liu, Zhiwei Lin, Shuang Liu, Zhaoming Hu, Xiaowen Zhang, Baoqing Sun\",\"doi\":\"10.1021/acs.jcim.5c00557\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Patients with locally advanced laryngeal and hypopharyngeal squamous cell carcinoma (LA-LHSCC) urgently need precise treatment strategies to improve the prognosis due to severe laryngeal functional impairment following traditional surgery and chemoradiotherapy. This study focuses on the mechanism of sensitivity to induction chemotherapy (IC), integrating the GSE184072 and TCGA-HNSC data sets to screen for differentially expressed genes (DEGs). Combining weighted gene coexpression network analysis (WGCNA) and machine learning methods, including MCC, MCODE, LASSO, SVM-RFE, and Random Forest (RF), the core gene DSC2 (Desmocollin-2) was identified. The results show that DSC2 is significantly highly expressed in the IC-sensitive group with a receiver operating characteristic (ROC) curve area under the curve (AUC) of 0.9111, indicating its high predictive efficacy as a biomarker. Immune infiltration analysis further revealed a significant correlation between DSC2 and the infiltration levels of immune cells such as M1 macrophages, suggesting its potential to influence IC sensitivity by regulating apoptosis and the immune microenvironment. Furthermore, the TCGA clinical data validated the correlation between DSC2 expression and patient survival rates. Our study is the first to establish DSC2 as a pivotal biomarker for IC sensitivity in LA-LHSCC patients, offering a novel avenue for the development of targeted therapeutic strategies and personalized diagnosis and treatment.</p>\",\"PeriodicalId\":44,\"journal\":{\"name\":\"Journal of Chemical Information and Modeling \",\"volume\":\" \",\"pages\":\"5899-5911\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2025-06-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Information and Modeling \",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jcim.5c00557\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/6/9 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MEDICINAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Information and Modeling ","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jcim.5c00557","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/9 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
Identification of DSC2 as a Key Biomarker for Induction Chemotherapy Sensitivity in Locally Advanced Laryngeal and Hypopharyngeal Squamous Cell Carcinoma.
Patients with locally advanced laryngeal and hypopharyngeal squamous cell carcinoma (LA-LHSCC) urgently need precise treatment strategies to improve the prognosis due to severe laryngeal functional impairment following traditional surgery and chemoradiotherapy. This study focuses on the mechanism of sensitivity to induction chemotherapy (IC), integrating the GSE184072 and TCGA-HNSC data sets to screen for differentially expressed genes (DEGs). Combining weighted gene coexpression network analysis (WGCNA) and machine learning methods, including MCC, MCODE, LASSO, SVM-RFE, and Random Forest (RF), the core gene DSC2 (Desmocollin-2) was identified. The results show that DSC2 is significantly highly expressed in the IC-sensitive group with a receiver operating characteristic (ROC) curve area under the curve (AUC) of 0.9111, indicating its high predictive efficacy as a biomarker. Immune infiltration analysis further revealed a significant correlation between DSC2 and the infiltration levels of immune cells such as M1 macrophages, suggesting its potential to influence IC sensitivity by regulating apoptosis and the immune microenvironment. Furthermore, the TCGA clinical data validated the correlation between DSC2 expression and patient survival rates. Our study is the first to establish DSC2 as a pivotal biomarker for IC sensitivity in LA-LHSCC patients, offering a novel avenue for the development of targeted therapeutic strategies and personalized diagnosis and treatment.
期刊介绍:
The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery.
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