Muthu Vallinayagam, Melanie Nentwich, Dirk C Meyer, Matthias Zschornak
{"title":"线性化例程的参数空间概念,以确定晶体结构无需傅里叶反演。","authors":"Muthu Vallinayagam, Melanie Nentwich, Dirk C Meyer, Matthias Zschornak","doi":"10.1107/S1600576725001955","DOIUrl":null,"url":null,"abstract":"<p><p>We present the elaboration and first generally applicable linearization routines of the parameter space concept (PSC) for determining one-dimensionally projected structures of <i>m</i> independent scatterers. This crystal determination approach does not rely on Fourier inversion but rather considers all structure parameter combinations consistent with available diffraction data in a parameter space of dimension <i>m</i>. The method utilizes <i>m</i> structure-factor amplitudes or intensities represented by piecewise analytic hyper-surfaces to define the acceptable parameter regions. The coordinates of the point scatterers are obtained through the intersection of multiple isosurfaces. This approach allows for the detection of all possible solutions for the given structure-factor amplitudes in a single derivation. Taking the resonant contrast into account, the spatial resolution achieved by the presented method may exceed that of traditional Fourier inversion, and the algorithms can be significantly optimized by exploiting the symmetry properties of the isosurfaces. The applied one-dimensional projection demonstrates the efficiency of the PSC linearization approach based on fewer reflections than Fourier sums. Monte Carlo simulations, using the projections of various random two- and three-atom structure examples, are presented to illustrate the universal applicability of the proposed method. Furthermore, ongoing efforts aim to enhance the efficiency of data handling and to overcome current constraints, promising further advancements in the capabilities and accuracy of the PSC framework.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 3","pages":"768-788"},"PeriodicalIF":2.8000,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12135979/pdf/","citationCount":"0","resultStr":"{\"title\":\"Linearization routines for the parameter space concept to determine crystal structures without Fourier inversion.\",\"authors\":\"Muthu Vallinayagam, Melanie Nentwich, Dirk C Meyer, Matthias Zschornak\",\"doi\":\"10.1107/S1600576725001955\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We present the elaboration and first generally applicable linearization routines of the parameter space concept (PSC) for determining one-dimensionally projected structures of <i>m</i> independent scatterers. This crystal determination approach does not rely on Fourier inversion but rather considers all structure parameter combinations consistent with available diffraction data in a parameter space of dimension <i>m</i>. The method utilizes <i>m</i> structure-factor amplitudes or intensities represented by piecewise analytic hyper-surfaces to define the acceptable parameter regions. The coordinates of the point scatterers are obtained through the intersection of multiple isosurfaces. This approach allows for the detection of all possible solutions for the given structure-factor amplitudes in a single derivation. Taking the resonant contrast into account, the spatial resolution achieved by the presented method may exceed that of traditional Fourier inversion, and the algorithms can be significantly optimized by exploiting the symmetry properties of the isosurfaces. The applied one-dimensional projection demonstrates the efficiency of the PSC linearization approach based on fewer reflections than Fourier sums. Monte Carlo simulations, using the projections of various random two- and three-atom structure examples, are presented to illustrate the universal applicability of the proposed method. Furthermore, ongoing efforts aim to enhance the efficiency of data handling and to overcome current constraints, promising further advancements in the capabilities and accuracy of the PSC framework.</p>\",\"PeriodicalId\":14950,\"journal\":{\"name\":\"Journal of Applied Crystallography\",\"volume\":\"58 Pt 3\",\"pages\":\"768-788\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-05-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12135979/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Applied Crystallography\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://doi.org/10.1107/S1600576725001955\",\"RegionNum\":3,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/6/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Applied Crystallography","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1107/S1600576725001955","RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
Linearization routines for the parameter space concept to determine crystal structures without Fourier inversion.
We present the elaboration and first generally applicable linearization routines of the parameter space concept (PSC) for determining one-dimensionally projected structures of m independent scatterers. This crystal determination approach does not rely on Fourier inversion but rather considers all structure parameter combinations consistent with available diffraction data in a parameter space of dimension m. The method utilizes m structure-factor amplitudes or intensities represented by piecewise analytic hyper-surfaces to define the acceptable parameter regions. The coordinates of the point scatterers are obtained through the intersection of multiple isosurfaces. This approach allows for the detection of all possible solutions for the given structure-factor amplitudes in a single derivation. Taking the resonant contrast into account, the spatial resolution achieved by the presented method may exceed that of traditional Fourier inversion, and the algorithms can be significantly optimized by exploiting the symmetry properties of the isosurfaces. The applied one-dimensional projection demonstrates the efficiency of the PSC linearization approach based on fewer reflections than Fourier sums. Monte Carlo simulations, using the projections of various random two- and three-atom structure examples, are presented to illustrate the universal applicability of the proposed method. Furthermore, ongoing efforts aim to enhance the efficiency of data handling and to overcome current constraints, promising further advancements in the capabilities and accuracy of the PSC framework.
期刊介绍:
Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.