从旋转光谱研究脯氨酸甲酯具有挑战性的构象分配

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Dinesh Marasinghe, Michael J. Carrillo, Dakota Z. Smallridge, Kaitlyn E. Butts, Bijaya Bagale and Michael J. Tubergen
{"title":"从旋转光谱研究脯氨酸甲酯具有挑战性的构象分配","authors":"Dinesh Marasinghe, Michael J. Carrillo, Dakota Z. Smallridge, Kaitlyn E. Butts, Bijaya Bagale and Michael J. Tubergen","doi":"10.1039/D5CP00898K","DOIUrl":null,"url":null,"abstract":"<p >The conformational structures of proline methyl ester (PrOMe) were modeled using CREST and further optimized using ωB97XD and MP2 methods with the 6-311++G(d,p) and aug-cc-pVDZ basis sets. Among the seven lowest energy conformers, two unique conformers, C<small><sup>γ</sup></small>-<em>exo</em>/C<small><sup>δ</sup></small>-<em>endo</em> and C<small><sup>γ</sup></small>-<em>endo</em>, were found to be very close to the minimum energy. A rotational spectrum consisting of 51 rotational transitions was recorded for PrOMe using a cavity-based Fourier-transform microwave spectrometer in the range 9–20 GHz. The rotational transitions, split into resolved <small><sup>14</sup></small>N-nuclear quadrupole hyperfine components for the <em>A</em>- and <em>E</em>-methyl-internal-rotation tunneling states, were fit using XIAM: <em>A</em> = 3678.4360(7) MHz, <em>B</em> = 1037.5616(3) MHz, and <em>C</em> = 944.2045(3) MHz, and the barrier to methyl torsion was found to be 393.54(9) cm<small><sup>−1</sup></small>. Comparison of model and spectroscopic moments of inertia is insufficient to conclusively assign the conformational structure. Analysis of second moments of inertia, dipole moment projections, and nuclear quadrupole hyperfine constants provides sufficient additional evidence to determine that the rotational spectrum is from a structure with an intramolecular hydrogen bond from the imino hydrogen to the carbonyl oxygen and with C<small><sup>γ</sup></small><em>endo</em>.</p>","PeriodicalId":99,"journal":{"name":"Physical Chemistry Chemical Physics","volume":" 24","pages":" 13167-13173"},"PeriodicalIF":2.9000,"publicationDate":"2025-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/cp/d5cp00898k?page=search","citationCount":"0","resultStr":"{\"title\":\"The challenging conformer assignment of proline methyl ester from rotational spectroscopy†\",\"authors\":\"Dinesh Marasinghe, Michael J. Carrillo, Dakota Z. Smallridge, Kaitlyn E. Butts, Bijaya Bagale and Michael J. Tubergen\",\"doi\":\"10.1039/D5CP00898K\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >The conformational structures of proline methyl ester (PrOMe) were modeled using CREST and further optimized using ωB97XD and MP2 methods with the 6-311++G(d,p) and aug-cc-pVDZ basis sets. Among the seven lowest energy conformers, two unique conformers, C<small><sup>γ</sup></small>-<em>exo</em>/C<small><sup>δ</sup></small>-<em>endo</em> and C<small><sup>γ</sup></small>-<em>endo</em>, were found to be very close to the minimum energy. A rotational spectrum consisting of 51 rotational transitions was recorded for PrOMe using a cavity-based Fourier-transform microwave spectrometer in the range 9–20 GHz. The rotational transitions, split into resolved <small><sup>14</sup></small>N-nuclear quadrupole hyperfine components for the <em>A</em>- and <em>E</em>-methyl-internal-rotation tunneling states, were fit using XIAM: <em>A</em> = 3678.4360(7) MHz, <em>B</em> = 1037.5616(3) MHz, and <em>C</em> = 944.2045(3) MHz, and the barrier to methyl torsion was found to be 393.54(9) cm<small><sup>−1</sup></small>. Comparison of model and spectroscopic moments of inertia is insufficient to conclusively assign the conformational structure. Analysis of second moments of inertia, dipole moment projections, and nuclear quadrupole hyperfine constants provides sufficient additional evidence to determine that the rotational spectrum is from a structure with an intramolecular hydrogen bond from the imino hydrogen to the carbonyl oxygen and with C<small><sup>γ</sup></small><em>endo</em>.</p>\",\"PeriodicalId\":99,\"journal\":{\"name\":\"Physical Chemistry Chemical Physics\",\"volume\":\" 24\",\"pages\":\" 13167-13173\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2025-06-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.rsc.org/en/content/articlepdf/2025/cp/d5cp00898k?page=search\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Physical Chemistry Chemical Physics\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2025/cp/d5cp00898k\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical Chemistry Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2025/cp/d5cp00898k","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

以6-311++G(d,p)和8 -cc- pvdz为基集,利用ωB97XD和MP2方法对脯氨酸甲酯(PrOMe)的构象结构进行了优化。在7个能量最低的构象中,Cγ-exo/Cδ-endo和Cγ-endo这两个独特的构象非常接近全局最小能量。利用基于腔的傅里叶变换微波光谱仪记录了PrOMe在9-20 GHz范围内的51个旋转跃迁的旋转光谱。将A-和E-甲基内旋隧道态的旋转跃迁分解为可分辨的14n核四极超精细组分,用XIAM和Watson的A-约简哈密顿量进行拟合:A = 3678.4360(7) MHz, B = 1037.5616(3) MHz, C = 944.2045(3) MHz,发现甲基扭转势垒为393.54(9)cm-1。模型转动惯量和光谱转动惯量的比较不足以确定构象结构。第二惯性矩、偶极矩投影和核四极超精细常数的分析提供了足够的额外证据,以确定旋转光谱来自具有分子内氢键的结构,从亚胺氢到羰基氧,并具有c - γ端。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The challenging conformer assignment of proline methyl ester from rotational spectroscopy†

The conformational structures of proline methyl ester (PrOMe) were modeled using CREST and further optimized using ωB97XD and MP2 methods with the 6-311++G(d,p) and aug-cc-pVDZ basis sets. Among the seven lowest energy conformers, two unique conformers, Cγ-exo/Cδ-endo and Cγ-endo, were found to be very close to the minimum energy. A rotational spectrum consisting of 51 rotational transitions was recorded for PrOMe using a cavity-based Fourier-transform microwave spectrometer in the range 9–20 GHz. The rotational transitions, split into resolved 14N-nuclear quadrupole hyperfine components for the A- and E-methyl-internal-rotation tunneling states, were fit using XIAM: A = 3678.4360(7) MHz, B = 1037.5616(3) MHz, and C = 944.2045(3) MHz, and the barrier to methyl torsion was found to be 393.54(9) cm−1. Comparison of model and spectroscopic moments of inertia is insufficient to conclusively assign the conformational structure. Analysis of second moments of inertia, dipole moment projections, and nuclear quadrupole hyperfine constants provides sufficient additional evidence to determine that the rotational spectrum is from a structure with an intramolecular hydrogen bond from the imino hydrogen to the carbonyl oxygen and with Cγendo.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信