EnderScope .py：使用EnderScope自动显微镜的计算成像库

IF 2.4 4区计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING

SoftwareX Pub Date : 2025-06-04 DOI:10.1016/j.softx.2025.102210

Sirine Gharbi , Emeric Poiraud , Hugo Le Guenno , Erwan Grandgirard , Charly Rousseau , Niamh Burke , Jerome Mutterer , David Rousseau

{"title":"EnderScope .py：使用EnderScope自动显微镜的计算成像库","authors":"Sirine Gharbi , Emeric Poiraud , Hugo Le Guenno , Erwan Grandgirard , Charly Rousseau , Niamh Burke , Jerome Mutterer , David Rousseau","doi":"10.1016/j.softx.2025.102210","DOIUrl":null,"url":null,"abstract":"<div><div>We describe a new software library written in the Python programming language to perform computational imaging on the so-called EnderScope, an automated imaging system based on the 3-axis motion stage of a 3D printer. This library is designed to be easy to use for beginner users and provides high-level functions to access used devices. We provide practical use cases and example codes using the library as an educational tool for testing, experimenting or developing computational imaging and smart microscopy algorithms.</div></div>","PeriodicalId":21905,"journal":{"name":"SoftwareX","volume":"31 ","pages":"Article 102210"},"PeriodicalIF":2.4000,"publicationDate":"2025-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Enderscope.py: A library for computational imaging using the EnderScope automated microscope\",\"authors\":\"Sirine Gharbi , Emeric Poiraud , Hugo Le Guenno , Erwan Grandgirard , Charly Rousseau , Niamh Burke , Jerome Mutterer , David Rousseau\",\"doi\":\"10.1016/j.softx.2025.102210\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>We describe a new software library written in the Python programming language to perform computational imaging on the so-called EnderScope, an automated imaging system based on the 3-axis motion stage of a 3D printer. This library is designed to be easy to use for beginner users and provides high-level functions to access used devices. We provide practical use cases and example codes using the library as an educational tool for testing, experimenting or developing computational imaging and smart microscopy algorithms.</div></div>\",\"PeriodicalId\":21905,\"journal\":{\"name\":\"SoftwareX\",\"volume\":\"31 \",\"pages\":\"Article 102210\"},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2025-06-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"SoftwareX\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352711025001773\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, SOFTWARE ENGINEERING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"SoftwareX","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352711025001773","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}

引用次数: 0

摘要

我们描述了一个用Python编程语言编写的新软件库，用于在所谓的EnderScope上执行计算成像，这是一个基于3D打印机3轴运动平台的自动成像系统。该库旨在为初学者用户提供易于使用的功能，并提供高级功能来访问使用过的设备。我们提供实际用例和示例代码，使用库作为测试，实验或开发计算成像和智能显微镜算法的教育工具。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

查看原文本刊更多论文

Enderscope.py: A library for computational imaging using the EnderScope automated microscope

We describe a new software library written in the Python programming language to perform computational imaging on the so-called EnderScope, an automated imaging system based on the 3-axis motion stage of a 3D printer. This library is designed to be easy to use for beginner users and provides high-level functions to access used devices. We provide practical use cases and example codes using the library as an educational tool for testing, experimenting or developing computational imaging and smart microscopy algorithms.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

SoftwareX COMPUTER SCIENCE, SOFTWARE ENGINEERING-

CiteScore

5.50

自引率

2.90%

发文量

184

审稿时长

9 weeks

期刊介绍： SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.