sivirep：加强流行病学监测和报告生成的一揽子计划——哥伦比亚用例

IF 2.4 4区计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING

SoftwareX Pub Date : 2025-06-04 DOI:10.1016/j.softx.2025.102206

Geraldine Gómez-Millán , Claudia Huguett-Aragón , Jennifer A. Méndez-Romero , Jaime A. Pavlich-Mariscal , Andrés Moreno , Zulma M. Cucunubá

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引用次数: 0

摘要

本文介绍了sivirep，这是一个开源R包，旨在简化公共卫生中的流行病学监测和报告。sivirep是Epiverse track - lac倡议的一部分，该倡议旨在加强拉丁美洲和加勒比的基础设施和传染病流行病应对措施。该软件包可自动下载、预处理和准备哥伦比亚流行病学监测和报告系统“SIVIGILA”的数据。sivirep还提供了一个可定制的R Markdown模板，用于后续分析和自动生成流行病学报告。sivirep是用西班牙语开发的，目的是提高当地用户的参与度，但也可以在全球范围内使用，使潜在的全球用途与当地需求保持一致。该工具还可以为来自不同领域的学生和研究人员在SIVIGILA数据源上的教学提供便利。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

sivirep: A package for strengthening epidemiological surveillance and report generation—Use case in Colombia

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sivirep: A package for strengthening epidemiological surveillance and report generation—Use case in Colombia

This paper presents sivirep, an open-source R package created to streamline epidemiological surveillance and reporting in public health. sivirep is part of the Epiverse TRACE-LAC initiative, which aims to strengthen the infrastructure and epidemic response to infectious diseases in Latin America and the Caribbean. This package automates the downloading, preprocessing, and preparation of data from Colombia’s epidemiological surveillance and reporting system, “SIVIGILA”. sivirep also provides a customizable R Markdown template for subsequent analysis and automatic generation of epidemiological reports. sivirep was developed in Spanish to improve the engagement of local users, but can be used worldwide, keeping both potential global uses aligned with local needs. This tool also can facilitate teaching and learning on SIVIGILA data source for students and researchers from various fields.

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来源期刊

SoftwareX COMPUTER SCIENCE, SOFTWARE ENGINEERING-

CiteScore

5.50

自引率

2.90%

发文量

184

审稿时长

9 weeks

期刊介绍： SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.