应用主动学习建立ni -光氧化还原芳基和烷基溴交叉亲电偶联的可推广模型

IF 15.6 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Lucas W. Souza, Nathan D. Ricke, Braden C. Chaffin, Mike E. Fortunato, Shutian Jiang, Cihan Soylu, Thomas C. Caya, Sii Hong Lau, Katherine A. Wieser, Abigail G. Doyle* and Kian L. Tan*, 
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引用次数: 0

摘要

在开发用于良率预测的机器学习模型时,两个主要挑战是有效地探索条件空间和基板空间。在本文中,我们揭示了一种在高通量实验(HTE)背景下绘制Ni/光氧化还原催化烷基溴和芳基溴的交叉亲电偶联的底物空间的方法。该模型采用主动学习(特别是不确定性查询)作为快速构建产量模型的策略。考虑到基材空间的巨大,我们专注于一种方法,即建立初始模型,然后使用最小数据集扩展到新的化学空间。特别是,我们用不到400个数据点为22240个化合物的虚拟空间建立了一个模型。我们证明,通过添加24个构建块(<;100个额外的反应)的信息,该模型可以扩展到33,312个化合物。将基于主动学习的模型与基于随机选择数据的模型进行比较,发现主动学习模型在预测哪些反应会成功方面明显更好。采用密度泛函理论(DFT)和差分摩根指纹相结合的方法构建随机森林模型。特征重要性分析表明,与反应机理相关的关键DFT特征(如烷基自由基LUMO能量)对于模型性能和对训练集外芳基溴的预测至关重要。我们预计,结合DFT特征和基于不确定性的查询将有助于合成有机群落以数据高效的方式为其他具有大范围和不同范围的化学反应建立预测模型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Applying Active Learning toward Building a Generalizable Model for Ni-Photoredox Cross-Electrophile Coupling of Aryl and Alkyl Bromides

Applying Active Learning toward Building a Generalizable Model for Ni-Photoredox Cross-Electrophile Coupling of Aryl and Alkyl Bromides

When developing machine learning models for yield prediction, the two main challenges are effectively exploring condition space and substrate space. In this article, we disclose an approach for mapping the substrate space for Ni/photoredox-catalyzed cross-electrophile coupling of alkyl bromides and aryl bromides in a high-throughput experimentation (HTE) context. This model employs active learning (in particular, uncertainty querying) as a strategy to rapidly construct a yield model. Given the vastness of substrate space, we focused on an approach that builds an initial model and then uses a minimal data set to expand into new chemical spaces. In particular, we built a model for a virtual space of 22,240 compounds using less than 400 data points. We demonstrated that the model can be expanded to 33,312 compounds by adding information around 24 building blocks (<100 additional reactions). Comparing the active learning-based model to one constructed on randomly selected data showed that the active learning model was significantly better at predicting which reactions will be successful. A combination of density function theory (DFT) and difference Morgan fingerprints was employed to construct the random forest model. Feature importance analysis indicates that key DFT features that are related to the reaction mechanism (e.g., alkyl radical LUMO energy) were crucial for model performance and predictions on aryl bromides outside the training set. We anticipate that combining DFT featurization and uncertainty-based querying will help the synthetic organic community build predictive models in a data-efficient manner for other chemical reactions that feature large and diverse scopes.

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来源期刊
CiteScore
24.40
自引率
6.00%
发文量
2398
审稿时长
1.6 months
期刊介绍: The flagship journal of the American Chemical Society, known as the Journal of the American Chemical Society (JACS), has been a prestigious publication since its establishment in 1879. It holds a preeminent position in the field of chemistry and related interdisciplinary sciences. JACS is committed to disseminating cutting-edge research papers, covering a wide range of topics, and encompasses approximately 19,000 pages of Articles, Communications, and Perspectives annually. With a weekly publication frequency, JACS plays a vital role in advancing the field of chemistry by providing essential research.
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