{"title":"通过DFT计算揭示了联苯网络对氯代脂肪烃污染物的感知特性","authors":"Erwin García-Hernández","doi":"10.1016/j.jmgm.2025.109099","DOIUrl":null,"url":null,"abstract":"<div><div>Biphenylene, a recently synthesized graphene allotrope, has demonstrated potential for pollutant adsorption and sensing applications. In this study, we investigate the interactions between biphenylene and three chlorinated aliphatic hydrocarbons: dichloroethylene, trichloromethane, and tetrachloroethylene, utilizing density functional theory calculations. Geometrical analysis shows that all complexes exhibit interaction distances above 3.3 Å, indicating physisorption governed by van der Waals forces. The complex with tetrachloroethylene exhibits the strongest interaction (adsorption energy of −0.48 eV) due to π–π stacking, while the systems with trichloromethane and dichloroethylene exhibit weaker adsorption (−0.30 eV and −0.35 eV, respectively). Solvent effects slightly diminish adsorption stability by up to ∼6 %. Electronic analysis reveals that biphenylene retains its intrinsic properties upon complexation, with minimal changes in the HOMO-LUMO gap (1.00 eV) and chemical potential (−3.92 eV). However, the dipole moment increases significantly (up to 1.40 D for the trichloromethane complex), enhancing solubility. Rapid recovery times for the complexes with trichloromethane (1.33 × 10<sup>−7</sup> s) and dichloroethylene (8.41 × 10<sup>−7</sup> s) suggest excellent sensing capabilities, while the tetrachloroethylene system's longer desorption time (1.42 × 10<sup>−4</sup> s) indicates potential for pollutant adsorption. These findings highlight biphenylene as a promising material for environmental applications, including the sensing and removal of chlorinated pollutants.</div></div>","PeriodicalId":16361,"journal":{"name":"Journal of molecular graphics & modelling","volume":"140 ","pages":"Article 109099"},"PeriodicalIF":3.0000,"publicationDate":"2025-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Unveiling the chlorinated aliphatic hydrocarbon contaminants sensing properties of the biphenylene network through DFT calculations\",\"authors\":\"Erwin García-Hernández\",\"doi\":\"10.1016/j.jmgm.2025.109099\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Biphenylene, a recently synthesized graphene allotrope, has demonstrated potential for pollutant adsorption and sensing applications. In this study, we investigate the interactions between biphenylene and three chlorinated aliphatic hydrocarbons: dichloroethylene, trichloromethane, and tetrachloroethylene, utilizing density functional theory calculations. Geometrical analysis shows that all complexes exhibit interaction distances above 3.3 Å, indicating physisorption governed by van der Waals forces. The complex with tetrachloroethylene exhibits the strongest interaction (adsorption energy of −0.48 eV) due to π–π stacking, while the systems with trichloromethane and dichloroethylene exhibit weaker adsorption (−0.30 eV and −0.35 eV, respectively). Solvent effects slightly diminish adsorption stability by up to ∼6 %. Electronic analysis reveals that biphenylene retains its intrinsic properties upon complexation, with minimal changes in the HOMO-LUMO gap (1.00 eV) and chemical potential (−3.92 eV). However, the dipole moment increases significantly (up to 1.40 D for the trichloromethane complex), enhancing solubility. Rapid recovery times for the complexes with trichloromethane (1.33 × 10<sup>−7</sup> s) and dichloroethylene (8.41 × 10<sup>−7</sup> s) suggest excellent sensing capabilities, while the tetrachloroethylene system's longer desorption time (1.42 × 10<sup>−4</sup> s) indicates potential for pollutant adsorption. These findings highlight biphenylene as a promising material for environmental applications, including the sensing and removal of chlorinated pollutants.</div></div>\",\"PeriodicalId\":16361,\"journal\":{\"name\":\"Journal of molecular graphics & modelling\",\"volume\":\"140 \",\"pages\":\"Article 109099\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-05-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of molecular graphics & modelling\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1093326325001597\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of molecular graphics & modelling","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1093326325001597","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Unveiling the chlorinated aliphatic hydrocarbon contaminants sensing properties of the biphenylene network through DFT calculations
Biphenylene, a recently synthesized graphene allotrope, has demonstrated potential for pollutant adsorption and sensing applications. In this study, we investigate the interactions between biphenylene and three chlorinated aliphatic hydrocarbons: dichloroethylene, trichloromethane, and tetrachloroethylene, utilizing density functional theory calculations. Geometrical analysis shows that all complexes exhibit interaction distances above 3.3 Å, indicating physisorption governed by van der Waals forces. The complex with tetrachloroethylene exhibits the strongest interaction (adsorption energy of −0.48 eV) due to π–π stacking, while the systems with trichloromethane and dichloroethylene exhibit weaker adsorption (−0.30 eV and −0.35 eV, respectively). Solvent effects slightly diminish adsorption stability by up to ∼6 %. Electronic analysis reveals that biphenylene retains its intrinsic properties upon complexation, with minimal changes in the HOMO-LUMO gap (1.00 eV) and chemical potential (−3.92 eV). However, the dipole moment increases significantly (up to 1.40 D for the trichloromethane complex), enhancing solubility. Rapid recovery times for the complexes with trichloromethane (1.33 × 10−7 s) and dichloroethylene (8.41 × 10−7 s) suggest excellent sensing capabilities, while the tetrachloroethylene system's longer desorption time (1.42 × 10−4 s) indicates potential for pollutant adsorption. These findings highlight biphenylene as a promising material for environmental applications, including the sensing and removal of chlorinated pollutants.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.