Nguyen Huu Tho, Ngo Huyen Tran, Pham Hong Cam, Nguyen Minh Tam
{"title":"铜掺杂硼簇BnCu0/- (n = 1-13)的几何和电子结构、稳定性和芳香性。","authors":"Nguyen Huu Tho, Ngo Huyen Tran, Pham Hong Cam, Nguyen Minh Tam","doi":"10.1007/s00894-025-06381-0","DOIUrl":null,"url":null,"abstract":"<p><strong>Context: </strong>Besides small pure boron clusters which have been well studied, doped boron clusters, in particular with transition metal dopants, are also increasingly investigated due to their unique geometrical structures accompanied by novel physical and chemical properties. However, studies on copper-doped boron clusters are still scarce despite copper being a transition metal with important properties. In this context, the geometry, stability, and electronic properties of copper-doped boron clusters B<sub>n</sub>Cu<sup>0/-</sup> (n = 1-13) were systematically studied. The obtained results show that the geometries of neutral and anionic clusters are very similar only at sizes n = 2, 5, 6, 8, and 10. In the ground state, both neutral and anionic clusters tend to be in the low-spin state, except for B<sub>2</sub>Cu<sup>-</sup> and B<sub>6</sub>Cu<sup>-</sup>. The relative stability of these structures was evaluated using various energetic parameters. Moreover, the aromaticity of the B<sub>8</sub>Cu<sup>-</sup> anion along with its enhanced stability are also discussed and rationalized in detail.</p><p><strong>Method: </strong>In this work, the geometry optimization and the following molecular orbital analyses of B<sub>n</sub>Cu<sup>0/-</sup> (n = 1-13) structures are performed using density functional theory (DFT), specifically the hybrid functional TPSSh combined with the 6-311+ G(d) basis set for boron atoms and the aug-cc-pVTZ-PP basis set for a copper atom. To obtain more reliable results, the single point energies of some lowest lying isomers whose relative energy values are close corresponding to geometries optimized at the TPSSh/6-311+ G(d) (B) / aug-cc-pVTZ-PP (Cu) level were determined with higher precision at the CCSD(T) level with the same basis sets. Based on the obtained results at the DFT level, the energetic parameters are determined to elucidate thermodynamic stability of B<sub>n</sub>Cu clusters. NICS and ELF indices, the density of states, and AdNDP bond analysis are then examined to rationalize the aromaticity of the anion B<sub>8</sub>Cu<sup>-</sup>. All calculations were performed using the Gaussian 09 and Multiwfn programs.</p>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 6","pages":"179"},"PeriodicalIF":2.5000,"publicationDate":"2025-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Geometrical and electronic structures, stability, and aromaticity of copper-doped boron clusters B<sub>n</sub>Cu<sup>0/-</sup> (n = 1-13).\",\"authors\":\"Nguyen Huu Tho, Ngo Huyen Tran, Pham Hong Cam, Nguyen Minh Tam\",\"doi\":\"10.1007/s00894-025-06381-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Context: </strong>Besides small pure boron clusters which have been well studied, doped boron clusters, in particular with transition metal dopants, are also increasingly investigated due to their unique geometrical structures accompanied by novel physical and chemical properties. However, studies on copper-doped boron clusters are still scarce despite copper being a transition metal with important properties. In this context, the geometry, stability, and electronic properties of copper-doped boron clusters B<sub>n</sub>Cu<sup>0/-</sup> (n = 1-13) were systematically studied. The obtained results show that the geometries of neutral and anionic clusters are very similar only at sizes n = 2, 5, 6, 8, and 10. In the ground state, both neutral and anionic clusters tend to be in the low-spin state, except for B<sub>2</sub>Cu<sup>-</sup> and B<sub>6</sub>Cu<sup>-</sup>. The relative stability of these structures was evaluated using various energetic parameters. Moreover, the aromaticity of the B<sub>8</sub>Cu<sup>-</sup> anion along with its enhanced stability are also discussed and rationalized in detail.</p><p><strong>Method: </strong>In this work, the geometry optimization and the following molecular orbital analyses of B<sub>n</sub>Cu<sup>0/-</sup> (n = 1-13) structures are performed using density functional theory (DFT), specifically the hybrid functional TPSSh combined with the 6-311+ G(d) basis set for boron atoms and the aug-cc-pVTZ-PP basis set for a copper atom. To obtain more reliable results, the single point energies of some lowest lying isomers whose relative energy values are close corresponding to geometries optimized at the TPSSh/6-311+ G(d) (B) / aug-cc-pVTZ-PP (Cu) level were determined with higher precision at the CCSD(T) level with the same basis sets. Based on the obtained results at the DFT level, the energetic parameters are determined to elucidate thermodynamic stability of B<sub>n</sub>Cu clusters. NICS and ELF indices, the density of states, and AdNDP bond analysis are then examined to rationalize the aromaticity of the anion B<sub>8</sub>Cu<sup>-</sup>. 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Geometrical and electronic structures, stability, and aromaticity of copper-doped boron clusters BnCu0/- (n = 1-13).
Context: Besides small pure boron clusters which have been well studied, doped boron clusters, in particular with transition metal dopants, are also increasingly investigated due to their unique geometrical structures accompanied by novel physical and chemical properties. However, studies on copper-doped boron clusters are still scarce despite copper being a transition metal with important properties. In this context, the geometry, stability, and electronic properties of copper-doped boron clusters BnCu0/- (n = 1-13) were systematically studied. The obtained results show that the geometries of neutral and anionic clusters are very similar only at sizes n = 2, 5, 6, 8, and 10. In the ground state, both neutral and anionic clusters tend to be in the low-spin state, except for B2Cu- and B6Cu-. The relative stability of these structures was evaluated using various energetic parameters. Moreover, the aromaticity of the B8Cu- anion along with its enhanced stability are also discussed and rationalized in detail.
Method: In this work, the geometry optimization and the following molecular orbital analyses of BnCu0/- (n = 1-13) structures are performed using density functional theory (DFT), specifically the hybrid functional TPSSh combined with the 6-311+ G(d) basis set for boron atoms and the aug-cc-pVTZ-PP basis set for a copper atom. To obtain more reliable results, the single point energies of some lowest lying isomers whose relative energy values are close corresponding to geometries optimized at the TPSSh/6-311+ G(d) (B) / aug-cc-pVTZ-PP (Cu) level were determined with higher precision at the CCSD(T) level with the same basis sets. Based on the obtained results at the DFT level, the energetic parameters are determined to elucidate thermodynamic stability of BnCu clusters. NICS and ELF indices, the density of states, and AdNDP bond analysis are then examined to rationalize the aromaticity of the anion B8Cu-. All calculations were performed using the Gaussian 09 and Multiwfn programs.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.