使用量子化学和结构描述符的哈米特常数的机器学习驱动预测

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Vaneet Saini, Ranjeet Kumar
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引用次数: 0

摘要

理解和预测化学反应行为是化学领域的一项基本挑战。1935年引入的哈米特方程,一直是结构-活性关系建模的基石,特别是在物理有机化学中。本研究利用机器学习(ML)来预测各种苯甲酸衍生物的哈米特常数(σm和σp)。我们开发了一个超过900个分子的开源数据集,包括元、对和对称取代的变体,并采用各种ML模型来预测哈米特常数。量子化学描述符,结合基于mordred的电子、立体和拓扑描述符,用于训练额外树(ET)和人工神经网络(ann)等模型。ANN模型的准确率最高,检验R2为0.935,RMSE为0.084,优于其他模型和先前开发的图神经网络。特征重要性分析揭示了驱动预测的关键描述符,包括NBO电荷和HOMO能量。适用性域(AD)分析识别出AD外的异常值和化合物,确保了模型的可靠性。这项工作突出了机器学习在预测哈米特常数方面的潜力,为化学反应性分析和分子设计提供了一个强大的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A machine learning-driven prediction of Hammett constants using quantum chemical and structural descriptors
Understanding and predicting chemical reaction behavior is a fundamental challenge in chemistry. The Hammett equation, introduced in 1935, has been a cornerstone in modelling structure-activity relationships, particularly in physical organic chemistry. This study leverages machine learning (ML) to predict Hammett constants (σm and σp) for a diverse set of benzoic acid derivatives. We developed an open-source dataset of over 900 molecules, including meta-, para-, and symmetrically substituted variants, and employed various ML models to predict Hammett constants. Quantum chemical descriptors, combined with Mordred-based electronic, steric, and topological descriptors, were used to train models such as Extra Trees (ET) and Artificial Neural Networks (ANNs). The ANN model achieved the highest accuracy, with a test R2 of 0.935 and an RMSE of 0.084, outperforming other models and a previously developed graph neural networks. Feature importance analysis revealed key descriptors, including NBO charges and HOMO energies, driving the predictions. Applicability domain (AD) analysis identified outliers and compounds outside the AD, ensuring model reliability. This work highlights the potential of ML in predicting Hammett constants, offering a robust tool for chemical reactivity analysis and molecular design.
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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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