基于透明细胞肾细胞癌脂肪酸代谢相关基因模型的ECI2作为潜在预后生物标志物的鉴定

IF 1.4 4区 生物学 Q4 GENETICS & HEREDITY
Genetics research Pub Date : 2025-05-19 eCollection Date: 2025-01-01 DOI:10.1155/genr/2237539
Di Cui, Wenye Yang, Bo Guan, Wenxu Wu, Wenjiang Yu
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引用次数: 0

摘要

背景:透明细胞肾细胞癌(Clear cell renal cell carcinoma, ccRCC)是肾癌中最常见、恶性程度最高的亚型,以显著的脂质沉积为特征。研究表明其生长和转移与脂肪酸代谢密切相关。方法:在本研究中,我们整合TCGA转录组数据、CPTAC蛋白质组数据和单细胞数据集GSE152938,鉴定ccRCC中脂肪酸代谢相关的差异表达基因。利用LASSO算法,我们构建了一个基于这些基因的预后模型。Western blot和PCR分析证实了ECI2在ccRCC中的表达水平,并采用慢病毒转导法研究ECI2表达对肿瘤生物学行为的影响。结果:我们的研究结果表明,ECI2在ccRCC中表达下调,ECI2水平较低与患者预后较好相关。功能分析显示,过表达ECI2可显著抑制ccRCC细胞的增殖和迁移,并增加其对化疗药物奥沙利铂的敏感性。结论:本研究强调了ECI2在ccRCC中潜在的肿瘤抑制作用,并提示其作为诊断和治疗靶点的可行性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of ECI2 as Potential Prognostic Biomarkers Based on a Fatty Acid Metabolism-Related Gene Model in Clear Cell Renal Cell Carcinoma.

Background: Clear cell renal cell carcinoma (ccRCC) is the most common and highly malignant subtype of renal cancer, characterized by significant lipid deposition. Research has indicated that its growth and metastasis are closely associated with fatty acid metabolism. Methods: In this study, we integrated TCGA transcriptome data, CPTAC proteomics data, and the single-cell dataset GSE152938 to identify differentially expressed genes related to fatty acid metabolism in ccRCC. Using the LASSO algorithm, we constructed a prognostic model based on these genes. Western blot and PCR analyses confirmed the expression levels of the ECI2 in ccRCC, while lentiviral transduction was used to investigate the effects of ECI2 expression on tumor biological behaviors. Results: Our findings demonstrated that ECI2 expression is downregulated in ccRCC, and lower ECI2 levels correlate with better patient prognosis. Functional assays showed that overexpression of ECI2 significantly inhibited the proliferation and migration of ccRCC cells and increased their sensitivity to the chemotherapeutic drug oxaliplatin. Conclusion: This study highlights the potential tumor-suppressive role of ECI2 in ccRCC and suggests its viability as a diagnostic and therapeutic target.

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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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