Di Cui, Wenye Yang, Bo Guan, Wenxu Wu, Wenjiang Yu
{"title":"基于透明细胞肾细胞癌脂肪酸代谢相关基因模型的ECI2作为潜在预后生物标志物的鉴定","authors":"Di Cui, Wenye Yang, Bo Guan, Wenxu Wu, Wenjiang Yu","doi":"10.1155/genr/2237539","DOIUrl":null,"url":null,"abstract":"<p><p><b>Background:</b> Clear cell renal cell carcinoma (ccRCC) is the most common and highly malignant subtype of renal cancer, characterized by significant lipid deposition. Research has indicated that its growth and metastasis are closely associated with fatty acid metabolism. <b>Methods:</b> In this study, we integrated TCGA transcriptome data, CPTAC proteomics data, and the single-cell dataset GSE152938 to identify differentially expressed genes related to fatty acid metabolism in ccRCC. Using the LASSO algorithm, we constructed a prognostic model based on these genes. Western blot and PCR analyses confirmed the expression levels of the <i>ECI2</i> in ccRCC, while lentiviral transduction was used to investigate the effects of <i>ECI2</i> expression on tumor biological behaviors. <b>Results:</b> Our findings demonstrated that <i>ECI2</i> expression is downregulated in ccRCC, and lower <i>ECI2</i> levels correlate with better patient prognosis. Functional assays showed that overexpression of <i>ECI2</i> significantly inhibited the proliferation and migration of ccRCC cells and increased their sensitivity to the chemotherapeutic drug oxaliplatin. <b>Conclusion:</b> This study highlights the potential tumor-suppressive role of <i>ECI2</i> in ccRCC and suggests its viability as a diagnostic and therapeutic target.</p>","PeriodicalId":12778,"journal":{"name":"Genetics research","volume":"2025 ","pages":"2237539"},"PeriodicalIF":1.4000,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12105886/pdf/","citationCount":"0","resultStr":"{\"title\":\"Identification of <i>ECI2</i> as Potential Prognostic Biomarkers Based on a Fatty Acid Metabolism-Related Gene Model in Clear Cell Renal Cell Carcinoma.\",\"authors\":\"Di Cui, Wenye Yang, Bo Guan, Wenxu Wu, Wenjiang Yu\",\"doi\":\"10.1155/genr/2237539\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b>Background:</b> Clear cell renal cell carcinoma (ccRCC) is the most common and highly malignant subtype of renal cancer, characterized by significant lipid deposition. Research has indicated that its growth and metastasis are closely associated with fatty acid metabolism. <b>Methods:</b> In this study, we integrated TCGA transcriptome data, CPTAC proteomics data, and the single-cell dataset GSE152938 to identify differentially expressed genes related to fatty acid metabolism in ccRCC. Using the LASSO algorithm, we constructed a prognostic model based on these genes. Western blot and PCR analyses confirmed the expression levels of the <i>ECI2</i> in ccRCC, while lentiviral transduction was used to investigate the effects of <i>ECI2</i> expression on tumor biological behaviors. <b>Results:</b> Our findings demonstrated that <i>ECI2</i> expression is downregulated in ccRCC, and lower <i>ECI2</i> levels correlate with better patient prognosis. Functional assays showed that overexpression of <i>ECI2</i> significantly inhibited the proliferation and migration of ccRCC cells and increased their sensitivity to the chemotherapeutic drug oxaliplatin. <b>Conclusion:</b> This study highlights the potential tumor-suppressive role of <i>ECI2</i> in ccRCC and suggests its viability as a diagnostic and therapeutic target.</p>\",\"PeriodicalId\":12778,\"journal\":{\"name\":\"Genetics research\",\"volume\":\"2025 \",\"pages\":\"2237539\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2025-05-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12105886/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genetics research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1155/genr/2237539\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genetics research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1155/genr/2237539","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Identification of ECI2 as Potential Prognostic Biomarkers Based on a Fatty Acid Metabolism-Related Gene Model in Clear Cell Renal Cell Carcinoma.
Background: Clear cell renal cell carcinoma (ccRCC) is the most common and highly malignant subtype of renal cancer, characterized by significant lipid deposition. Research has indicated that its growth and metastasis are closely associated with fatty acid metabolism. Methods: In this study, we integrated TCGA transcriptome data, CPTAC proteomics data, and the single-cell dataset GSE152938 to identify differentially expressed genes related to fatty acid metabolism in ccRCC. Using the LASSO algorithm, we constructed a prognostic model based on these genes. Western blot and PCR analyses confirmed the expression levels of the ECI2 in ccRCC, while lentiviral transduction was used to investigate the effects of ECI2 expression on tumor biological behaviors. Results: Our findings demonstrated that ECI2 expression is downregulated in ccRCC, and lower ECI2 levels correlate with better patient prognosis. Functional assays showed that overexpression of ECI2 significantly inhibited the proliferation and migration of ccRCC cells and increased their sensitivity to the chemotherapeutic drug oxaliplatin. Conclusion: This study highlights the potential tumor-suppressive role of ECI2 in ccRCC and suggests its viability as a diagnostic and therapeutic target.
期刊介绍:
Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.