高维基因表达数据的双向多目标特征选择。

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Yunhe Wang, Zhengyu Du, Xiaomin Li, Wenyuan Xiao, Hongpu Liu, Liang Yang
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引用次数: 0

摘要

高维基因表达数据在疾病诊断等医学领域受到广泛关注,但面临着维数诅咒和计算量呈指数增长的挑战。在对数据进行分析时,特征选择是必不可少的一步,即降维。然而,大多数针对高维基因表达数据的特征选择算法仍然存在分类能力低、泛化能力差的问题。进化算法是增强特征选择全局搜索能力的有效范例。受进化算法竞争群优化的启发,提出了一种多目标双向竞争群优化(MODCSO)方法,用于从高维基因表达数据中进行特征选择。首先,我们设计了一个基于多目标优化的竞争群优化算法框架,同时进化三个目标函数。然后,我们引入了一种双向学习策略,该策略使用两种不同的学习策略来训练失败者组中的粒子。为了评估该算法的有效性和效率,我们在20个高维基因表达数据集和3个现实世界的生物数据集上进行了大量的实验来评估MODCSO。与各种领先的特征选择算法相比,我们提出的MODCSO算法在高维特征选择任务中表现出更强的竞争力。此外,我们还提供了其他广泛的分析来进一步证明MODCSO在处理高维基因表达数据方面的稳健性和生物学可解释性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evolving Dual-directional Multiobjective Feature Selection for High-dimensional Gene Expression Data.

High-dimensional gene expression data has gained considerable attention in diverse medical fields such as disease diagnosis, with the challenges of the dimensionality curse and exponentially growing computation. To analyze the data, feature selection is an essential step by reducing the dimensionality. However, most feature selection algorithms for high-dimensional gene expression data still suffer from low classification and poor generalization ability. An evolutionary algorithm is an effective paradigm for enhancing global search capability in feature selection. Inspired by the evolutionary algorithm Competitive Swarm Optimization, we propose a Multiobjective Dual-directional Competitive Swarm Optimization (MODCSO) method for feature selection from high-dimensional gene expression data. First, we design a competitive swarm optimization algorithm framework based on multi-objective optimization to evolve three objective functions simultaneously. Then, we introduce a dual-directional learning strategy that trains particles within the loser group using two distinct learning strategies. To assess the effectiveness and efficiency of the suggested algorithm, we evaluate MODCSO through extensive experiments on twenty high-dimensional gene expression datasets and three real-world biological datasets. Compared to various leading feature selection algorithms, our proposed algorithm MODCSO exhibits superior competitiveness for the high-dimensional feature selection task. Moreover, we provide other extensive analyses to demonstrate further the robustness and biological interpretability of MODCSO in handling high-dimensional gene expression data.

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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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