用糖皮质激素相关基因定义肺腺癌亚型并构建预后指标以指导免疫治疗。

IF 2.1 3区 医学 Q3 RESPIRATORY SYSTEM
Journal of thoracic disease Pub Date : 2025-04-30 Epub Date: 2025-04-28 DOI:10.21037/jtd-24-1083
Hongguang Tang, Jianhua Zhu, Yongliang Wang, Jianjie Zhang, Jianwei Zhou, Zhoumiao Chen
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引用次数: 0

摘要

背景:一些研究表明糖皮质激素相关基因(gcg)在癌症中起着至关重要的作用。然而,gcg在肺腺癌(LUAD)中的作用机制尚不完全清楚。本研究旨在通过整合gcg来识别LUAD的不同亚型,并建立预后模型以进行精确的预后预测和免疫治疗指导。方法:本研究从癌症基因组图谱(The Cancer Genome Atlas, TCGA)数据库中收集LUAD样本数据,采用无监督聚类方法鉴定具有不同gcg特征的LUAD亚型。通过差异表达分析和蛋白-蛋白相互作用(PPI)网络分析筛选存活相关基因。然后,采用最小绝对收缩和选择算子(LASSO)结合Cox回归分析建立预后模型。分析不同危险人群免疫微环境的差异,采用肿瘤免疫功能障碍与排斥(Tumor immune Dysfunction and Exclusion, TIDE)预测患者对免疫治疗的反应。最后,使用CellMiner数据库预测潜在药物。结果:LUAD分为两种亚型,即1型(高生存率)和2型(低生存率)。基于CLCA1、CYP17A1、GRIA2、IGFBP1、IGF2BP1、NTSR1、RPE65、VGF、WNT16等9个特征基因构建预后模型,对LUAD患者的预后有正向预测。不同风险LUAD患者的免疫微环境存在差异,高危LUAD患者免疫治疗获益可能较小。BGB-283是靶向VGF的LUAD候选药物。结论:我们的研究阐明了gcg对LUAD患者预后和免疫反应的影响,为LUAD患者的预后预测和免疫治疗策略提供了见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Defining lung adenocarcinoma subtypes with glucocorticoid-related genes and constructing a prognostic index for immunotherapy guidance.

Background: Several studies have shown that glucocorticoid-related genes (GCGs) play a crucial role in cancer. However, the mechanism of GCGs in lung adenocarcinoma (LUAD) is not fully understood. This study aimed to identify distinct subtypes of LUAD by integrating GCGs and to develop prognostic models for precise prognosis prediction and immunotherapy guidance.

Methods: In this study, sample data of LUAD were collected from The Cancer Genome Atlas (TCGA) database, and unsupervised clustering was used to identify LUAD subtypes with different GCGs characteristics. Survival-related genes were screened by differential expression analysis and protein-protein interaction (PPI) network analysis. After that, the least absolute shrinkage and selection operator (LASSO) combined with Cox regression analysis was used to establish the prognosis model. Differences in the immune microenvironment of different risk groups were analyzed, and Tumor Immune Dysfunction and Exclusion (TIDE) was used to predict the response of patients to immunotherapy. Finally, the CellMiner database was used to predict potential drugs.

Results: Two subtypes of LUAD were identified, namely cluster 1 (high survival rate) and cluster 2 (low survival rate). A prognostic model was constructed based on 9 characteristic genes, including CLCA1, CYP17A1, GRIA2, IGFBP1, IGF2BP1, NTSR1, RPE65, VGF, and WNT16, and the prognosis of LUAD patients was positively predicted. There were differences in the immune microenvironment of different risk LUAD patients, and high-risk LUAD patients may benefit less from immunotherapy. BGB-283 was a candidate for LUAD targeting VGF.

Conclusions: Our study elucidates the impact of GCGs on LUAD prognosis and immune responses, offering insights for prognostic forecasting and immunotherapeutic strategies for LUAD patients.

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来源期刊
Journal of thoracic disease
Journal of thoracic disease RESPIRATORY SYSTEM-
CiteScore
4.60
自引率
4.00%
发文量
254
期刊介绍: The Journal of Thoracic Disease (JTD, J Thorac Dis, pISSN: 2072-1439; eISSN: 2077-6624) was founded in Dec 2009, and indexed in PubMed in Dec 2011 and Science Citation Index SCI in Feb 2013. It is published quarterly (Dec 2009- Dec 2011), bimonthly (Jan 2012 - Dec 2013), monthly (Jan. 2014-) and openly distributed worldwide. JTD received its impact factor of 2.365 for the year 2016. JTD publishes manuscripts that describe new findings and provide current, practical information on the diagnosis and treatment of conditions related to thoracic disease. All the submission and reviewing are conducted electronically so that rapid review is assured.
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