QTAIM Ru-Ru的观点结合在一系列氢化tri-ruthenium集群:[{CpRu(μ- h)} 3(μ3-BH)], [{CpRu(μ- h)} 3(μ3 - h) 2], [{CpRu (CO)} 3(μ博)(μ- h) 2],和[{CpRu(μ- h)} 3(μ3-AlEt))

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Noorhan Ali Hamza, Haider Ali Hamza, Muhsen Abood Muhsen Al-Ibadi, Emad Salaam Abood, Ali R. Khudhair
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引用次数: 0

摘要

利用密度泛函理论(DFT)研究了[{CpRu(μ-H)}3(μ - bh)](1)、[{CpRu(μ-H)}3(μ-H)2](2)、[{CpRu(CO)}3(μ-BO)(μ-H)2](3)和[{CpRu(μ-H)}3(μ - alet)](4)团簇中钌-钌和钌-配体的相互作用。利用分子原子量子理论(QTAIM)计算了与电子密度相关的各种参数,包括电子密度ρ(b)、拉普拉斯∇2ρ(b)、局部能量密度H(b)、局部动能密度G(b)、势能密度V(b)和键离域指数(A, b)。计算了QTAIM的其他指标,如电子定位函数(ELF)和源函数(SF)。根据学术文献中所引用的过渡金属配合物,计算得到的拓扑参数是一致的。计算的数据使得比较相关但不同的原子间相互作用的拓扑特征成为可能,包括Ru-H相互作用与Ru-BH、Ru-BO和Ru-Al相互作用,以及h桥Ru-Ru相互作用与BH-、BO-和al桥相互作用。不同的桥接配体影响了Ru-Ru相互作用的电子密度分布。尽管在簇1和簇3中存在桥接氢化物和硼,簇2中存在氢,簇4中存在氢和铝,但没有观察到局域键、键临界键或键路径。然而,较大的离域指数δ(Ru, Ru)表明通过桥接配体介导了显著的间接Ru - Ru相互作用。对于集群1、2、3和4,我们提出了其核心成分的以下相互作用:H3-Ru-B (7c-14e)、H5-Ru (8c-12e)、H2-Ru3-B (6c-8e)和H3-Ru3-Al (7c-14e)。AdNDP分析证实了在几个基于Ru₃的簇中存在4c-2e多中心键,强调了电子离域在稳定其核心结构中的关键作用。BO配体的离域指数较高,为1.023,表明它共用一对电子。此外,聚类3的离域指数δ(Ru…OCO)非常大,为0.576。说明CO配体在M π反给体中起重要作用。方法利用Ru原子的PBE1PBE杂化泛函和有效核心电位LanL2DZ基集,以及其他原子(Al、B、H、C和O)的全电子6-31G(d)基集,采用高斯09程序进行优化。在进行无限制优化后,通过检查是否存在虚振动频率,验证几何形状为局部最小值。利用AIM2000和Multiwfn软件,结合PBE1PBE/WTBS对Ru原子进行QTAIM分析。6-31G(d,p)和6-311 + + G(3df,3pd)是Al, B, H, C和o原子的基集。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
QTAIM view of Ru–Ru bonding in a series of tri-ruthenium hydride clusters: [{CpRu(μ-H)}3(μ3-BH)], [{CpRu(μ-H)}3(μ3-H)2], [{CpRu(CO)}3(μ-BO)(μ-H)2], and [{CpRu(μ-H)}3(μ3-AlEt)]

Context

The ruthenium–ruthenium and ruthenium-ligand bonding interactions in the [{CpRu(μ-H)} 33-BH)](1), [{CpRu(μ-H)}33-H)2](2), [{CpRu(CO)}3(μ-BO)(μ-H)2](3), and [{CpRu(μ-H)}33-AlEt)](4) clusters were examined using density functional theory (DFT). Various parameters related to electron density, including the electron density ρ(b), Laplacian ∇2ρ(b), local energy density H(b), local kinetic energy density G(b), potential energy density V(b), and bond delocalization index (A, B), were calculated using the quantum theory of atoms in a molecule (QTAIM). Other QTAIM indicators, such as the electron localization function (ELF) and source function (SF) were computed. According to the transition metal complexes referenced in the academic literature, the computed topological parameters are consistent. The calculated data have made it possible to compare the topological characteristics of related but distinct atom-to-atom interactions, including Ru–H interactions against Ru-BH, Ru-BO, and Ru-Al interactions, as well as H-bridged Ru–Ru interactions versus BH-, BO-, and Al-bridged interactions. The electron density distribution of the Ru–Ru interactions is influenced by different bridging ligands. Despite the presence of bridged hydride and boron in clusters 1 and 3, H in cluster 2, and H and Al in the Ru–Ru interactions of 4, no localized bond, bond critical, or bond path was observed. However, the large delocalization indices δ(Ru, Ru) indicate that significant indirect Ru–Ru interactions are mediated through bridging ligands. For clusters 1, 2, 3, and 4, we propose the following interactions for their core components: H3-Ru–B (7c–14e), H5-Ru (8c–12e), H2-Ru3-B (6c–8e), and H3-Ru3-Al (7c–14e). The AdNDP analysis confirms the presence of 4c–2e multicenter bonds in several Ru₃-based clusters, emphasizing the critical role of electron delocalization in stabilizing their core structures. The BO ligand has a higher delocalization index of 1.023, indicating that it shares a pair of electrons. Moreover, the delocalization index for cluster 3, δ(Ru…OCO), is very large at 0.576. This suggests that CO ligands play a significant role in M π-back-donation.

Methods

Using the PBE1PBE hybrid functional and an effective core potential LanL2DZ basis set for the atoms of Ru as well as the all-electron 6-31G(d) basis set for the other atoms (Al, B, H, C and O), the optimizations were performed using the Gaussian 09 program. The geometries were verified as a local minimum by examining if imaginary vibrational frequencies were present after unrestricted optimization was carried out. Utilizing AIM2000 and Multiwfn software, we conducted QTAIM analysis, incorporating PBE1PBE/WTBS for the Ru atoms. 6-31G(d,p) and 6–311 +  + G(3df,3pd) were the basis set for the atoms of Al, B, H, C and O. Moreover, we employed the SF and ELF.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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