{"title":"通过理论计算揭示了不同取代基对n -杂环膦化学活性的影响机理","authors":"Yilei Chen","doi":"10.1007/s00894-025-06390-z","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>N-Heterocyclic phosphines (NHP-H) represent a distinctive class of phosphorus-containing heterocycles characterized by “polarity-inverted” P–H bonds. These unique bonds facilitate a wide array of P–H reactions, rendering NHP-H compounds promising candidates for applications in organocatalysis. Although significant advancements have been made in NHP-H research, the experimental quantification of their reactivity parameters poses considerable challenges due to their high reactivity. Furthermore, the influence of various substituents on the chemical activity of NHP-H compounds remains insufficiently understood. This study examines eight NHP-H compounds with varying substituents. The findings indicate that electron-donating substituents decrease the P–H bond order, increase the negative charge on the phosphorus atom, and enhance nucleophilicity. Conversely, electron-withdrawing substituents exhibit opposite effects. Furthermore, substituents influence the local electron attachment energy of the phosphorus atom, thereby affecting reactivity in proton-transfer reactions. According to conceptual density functional theory, electron-donating substituents are associated with lower electrophilicity and higher nucleophilicity indices, whereas electron-withdrawing substituents demonstrate the opposite trend. Charge-transfer spectra suggest that electron-donating substituents reduce the excitation energy of NHP-H, thereby increasing its reactivity. Additionally, IRI analysis indicates that electron-donating substituents weaken the P–H bond, while electron-withdrawing substituents strengthen it, along with alterations in other intramolecular interactions.</p><h3>Methods</h3><p>The study utilized the M06-2X functional in conjunction with the def2-TZVP basis set within the SMD model, employing acetonitrile as the solvent, to perform structural optimization and frequency analysis of NHP-H compounds. Computational analyses were conducted using Gaussian 09 software, with 30 excited states calculated for each compound. Multiwfn software facilitated the determination of atomic dipole moment-corrected Hirshfeld population, local electron attachment energy, the Interaction Region Indicator, and charge-transfer spectrum, which were subsequently visualized using VMD 1.9.3. Additionally, GaussView 6.0.16 software was employed to generate three-dimensional molecular configurations and prepare input files.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 6","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s00894-025-06390-z.pdf","citationCount":"0","resultStr":"{\"title\":\"Unraveling the influence mechanisms of different substituents on the chemical activity of N-heterocyclic phosphines via theoretical calculations\",\"authors\":\"Yilei Chen\",\"doi\":\"10.1007/s00894-025-06390-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>N-Heterocyclic phosphines (NHP-H) represent a distinctive class of phosphorus-containing heterocycles characterized by “polarity-inverted” P–H bonds. These unique bonds facilitate a wide array of P–H reactions, rendering NHP-H compounds promising candidates for applications in organocatalysis. Although significant advancements have been made in NHP-H research, the experimental quantification of their reactivity parameters poses considerable challenges due to their high reactivity. Furthermore, the influence of various substituents on the chemical activity of NHP-H compounds remains insufficiently understood. This study examines eight NHP-H compounds with varying substituents. The findings indicate that electron-donating substituents decrease the P–H bond order, increase the negative charge on the phosphorus atom, and enhance nucleophilicity. Conversely, electron-withdrawing substituents exhibit opposite effects. Furthermore, substituents influence the local electron attachment energy of the phosphorus atom, thereby affecting reactivity in proton-transfer reactions. According to conceptual density functional theory, electron-donating substituents are associated with lower electrophilicity and higher nucleophilicity indices, whereas electron-withdrawing substituents demonstrate the opposite trend. Charge-transfer spectra suggest that electron-donating substituents reduce the excitation energy of NHP-H, thereby increasing its reactivity. Additionally, IRI analysis indicates that electron-donating substituents weaken the P–H bond, while electron-withdrawing substituents strengthen it, along with alterations in other intramolecular interactions.</p><h3>Methods</h3><p>The study utilized the M06-2X functional in conjunction with the def2-TZVP basis set within the SMD model, employing acetonitrile as the solvent, to perform structural optimization and frequency analysis of NHP-H compounds. Computational analyses were conducted using Gaussian 09 software, with 30 excited states calculated for each compound. Multiwfn software facilitated the determination of atomic dipole moment-corrected Hirshfeld population, local electron attachment energy, the Interaction Region Indicator, and charge-transfer spectrum, which were subsequently visualized using VMD 1.9.3. 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引用次数: 0
摘要
n -杂环膦(NHP-H)是一类独特的含磷杂环,其特征是“极性倒置”的P-H键。这些独特的键促进了广泛的P-H反应,使得npp - h化合物在有机催化方面的应用前景广阔。尽管NHP-H的研究取得了重大进展,但由于其高反应性,对其反应性参数的实验量化提出了相当大的挑战。此外,各种取代基对NHP-H化合物的化学活性的影响仍不充分了解。本研究考察了8种不同取代基的npp - h化合物。结果表明,供电子取代基降低了磷原子的P-H键顺序,增加了磷原子的负电荷,增强了亲核性。相反,吸电子取代基表现出相反的效果。此外,取代基影响磷原子的局部电子附着能,从而影响质子转移反应的反应活性。根据概念密度泛函理论,给电子取代基具有较低的亲电性和较高的亲核性,而吸电子取代基具有相反的趋势。电荷转移谱表明,给电子取代基降低了NHP-H的激发能,从而提高了其反应活性。此外,IRI分析表明,供电子取代基削弱了P-H键,而吸电子取代基加强了P-H键,并改变了其他分子内相互作用。方法利用M06-2X泛函结合SMD模型中的def2-TZVP基集,以乙腈为溶剂,对NHP-H化合物进行结构优化和频率分析。利用Gaussian 09软件进行计算分析,计算出每种化合物的30个激发态。Multiwfn软件有助于原子偶极矩校正的Hirshfeld居群、局部电子附着能、相互作用区指示和电荷转移谱的测定,随后使用VMD 1.9.3将其可视化。利用GaussView 6.0.16软件生成三维分子构型并制备输入文件。
Unraveling the influence mechanisms of different substituents on the chemical activity of N-heterocyclic phosphines via theoretical calculations
Context
N-Heterocyclic phosphines (NHP-H) represent a distinctive class of phosphorus-containing heterocycles characterized by “polarity-inverted” P–H bonds. These unique bonds facilitate a wide array of P–H reactions, rendering NHP-H compounds promising candidates for applications in organocatalysis. Although significant advancements have been made in NHP-H research, the experimental quantification of their reactivity parameters poses considerable challenges due to their high reactivity. Furthermore, the influence of various substituents on the chemical activity of NHP-H compounds remains insufficiently understood. This study examines eight NHP-H compounds with varying substituents. The findings indicate that electron-donating substituents decrease the P–H bond order, increase the negative charge on the phosphorus atom, and enhance nucleophilicity. Conversely, electron-withdrawing substituents exhibit opposite effects. Furthermore, substituents influence the local electron attachment energy of the phosphorus atom, thereby affecting reactivity in proton-transfer reactions. According to conceptual density functional theory, electron-donating substituents are associated with lower electrophilicity and higher nucleophilicity indices, whereas electron-withdrawing substituents demonstrate the opposite trend. Charge-transfer spectra suggest that electron-donating substituents reduce the excitation energy of NHP-H, thereby increasing its reactivity. Additionally, IRI analysis indicates that electron-donating substituents weaken the P–H bond, while electron-withdrawing substituents strengthen it, along with alterations in other intramolecular interactions.
Methods
The study utilized the M06-2X functional in conjunction with the def2-TZVP basis set within the SMD model, employing acetonitrile as the solvent, to perform structural optimization and frequency analysis of NHP-H compounds. Computational analyses were conducted using Gaussian 09 software, with 30 excited states calculated for each compound. Multiwfn software facilitated the determination of atomic dipole moment-corrected Hirshfeld population, local electron attachment energy, the Interaction Region Indicator, and charge-transfer spectrum, which were subsequently visualized using VMD 1.9.3. Additionally, GaussView 6.0.16 software was employed to generate three-dimensional molecular configurations and prepare input files.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.