{"title":"结合离散傅立叶变换和分子对接计算,研究了不同介质中福山苷类和黄酮类化合物的光谱和结构","authors":"S.V. Aswathy , I.Hubert Joe , K.B. Rameshkumar","doi":"10.1016/j.molliq.2025.127807","DOIUrl":null,"url":null,"abstract":"<div><div>The structural features and intramolecular interactions of morelloflavone (MFL) and its glycoside fukugiside (FKS) from <em>Garcinia</em> species were investigated using B3LYP/6–311++G(d,p) level of theory. <sup>1</sup>H NMR, <sup>13</sup>C NMR, FT-IR, FT-Raman, and UV–Vis spectroscopic analyses were also performed. Electronic absorptions were explored with TD-DFT in the gas phase and solvents (chloroform, DMSO, acetone), revealing significant solvent effects on electronic transitions. UV–Vis spectra in chloroform corroborated theoretical predictions, with key transitions attributed to LP (2) O7 → π* (C27-C30) and LP (2) O9 → π* (C33-C35), stabilized at 30.89 kJ/mol and 29.44 kJ/mol, respectively, as identified through NBO analysis. Non-covalent interactions and electronic localization were characterized through topological tools such as ELF, LOL, and RDG, elucidating weak interaction regions and electron density distribution. The molecular electrostatic potential (MEP) map was used to identify the reactive sites of the molecules, while TDOS and transition density matrix (TDM) analyses confirmed efficient charge transfer within the molecules. Biological insights were obtained through in silico studies. MFL exhibited promising tuberculosis inhibition, while FKS showed potential antiviral activity against COVID-19. Molecular docking results were validated by 100 ns molecular dynamics simulations, confirming the stability of ligand-receptor complexes. Additionally, ADMET profiling affirmed the drug-likeness and pharmacokinetic viability of both molecules. This integrated study highlights the structural, electronic, and pharmacological attributes of MFL and FKS.</div></div>","PeriodicalId":371,"journal":{"name":"Journal of Molecular Liquids","volume":"433 ","pages":"Article 127807"},"PeriodicalIF":5.3000,"publicationDate":"2025-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Spectroscopic and structural studies of fukugiside and morelloflavone biflavonoids in different Media combined with DFT and molecular docking calculations\",\"authors\":\"S.V. Aswathy , I.Hubert Joe , K.B. Rameshkumar\",\"doi\":\"10.1016/j.molliq.2025.127807\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The structural features and intramolecular interactions of morelloflavone (MFL) and its glycoside fukugiside (FKS) from <em>Garcinia</em> species were investigated using B3LYP/6–311++G(d,p) level of theory. <sup>1</sup>H NMR, <sup>13</sup>C NMR, FT-IR, FT-Raman, and UV–Vis spectroscopic analyses were also performed. Electronic absorptions were explored with TD-DFT in the gas phase and solvents (chloroform, DMSO, acetone), revealing significant solvent effects on electronic transitions. UV–Vis spectra in chloroform corroborated theoretical predictions, with key transitions attributed to LP (2) O7 → π* (C27-C30) and LP (2) O9 → π* (C33-C35), stabilized at 30.89 kJ/mol and 29.44 kJ/mol, respectively, as identified through NBO analysis. Non-covalent interactions and electronic localization were characterized through topological tools such as ELF, LOL, and RDG, elucidating weak interaction regions and electron density distribution. The molecular electrostatic potential (MEP) map was used to identify the reactive sites of the molecules, while TDOS and transition density matrix (TDM) analyses confirmed efficient charge transfer within the molecules. Biological insights were obtained through in silico studies. MFL exhibited promising tuberculosis inhibition, while FKS showed potential antiviral activity against COVID-19. Molecular docking results were validated by 100 ns molecular dynamics simulations, confirming the stability of ligand-receptor complexes. Additionally, ADMET profiling affirmed the drug-likeness and pharmacokinetic viability of both molecules. This integrated study highlights the structural, electronic, and pharmacological attributes of MFL and FKS.</div></div>\",\"PeriodicalId\":371,\"journal\":{\"name\":\"Journal of Molecular Liquids\",\"volume\":\"433 \",\"pages\":\"Article 127807\"},\"PeriodicalIF\":5.3000,\"publicationDate\":\"2025-05-17\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Liquids\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167732225009845\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Liquids","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167732225009845","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Spectroscopic and structural studies of fukugiside and morelloflavone biflavonoids in different Media combined with DFT and molecular docking calculations
The structural features and intramolecular interactions of morelloflavone (MFL) and its glycoside fukugiside (FKS) from Garcinia species were investigated using B3LYP/6–311++G(d,p) level of theory. 1H NMR, 13C NMR, FT-IR, FT-Raman, and UV–Vis spectroscopic analyses were also performed. Electronic absorptions were explored with TD-DFT in the gas phase and solvents (chloroform, DMSO, acetone), revealing significant solvent effects on electronic transitions. UV–Vis spectra in chloroform corroborated theoretical predictions, with key transitions attributed to LP (2) O7 → π* (C27-C30) and LP (2) O9 → π* (C33-C35), stabilized at 30.89 kJ/mol and 29.44 kJ/mol, respectively, as identified through NBO analysis. Non-covalent interactions and electronic localization were characterized through topological tools such as ELF, LOL, and RDG, elucidating weak interaction regions and electron density distribution. The molecular electrostatic potential (MEP) map was used to identify the reactive sites of the molecules, while TDOS and transition density matrix (TDM) analyses confirmed efficient charge transfer within the molecules. Biological insights were obtained through in silico studies. MFL exhibited promising tuberculosis inhibition, while FKS showed potential antiviral activity against COVID-19. Molecular docking results were validated by 100 ns molecular dynamics simulations, confirming the stability of ligand-receptor complexes. Additionally, ADMET profiling affirmed the drug-likeness and pharmacokinetic viability of both molecules. This integrated study highlights the structural, electronic, and pharmacological attributes of MFL and FKS.
期刊介绍:
The journal includes papers in the following areas:
– Simple organic liquids and mixtures
– Ionic liquids
– Surfactant solutions (including micelles and vesicles) and liquid interfaces
– Colloidal solutions and nanoparticles
– Thermotropic and lyotropic liquid crystals
– Ferrofluids
– Water, aqueous solutions and other hydrogen-bonded liquids
– Lubricants, polymer solutions and melts
– Molten metals and salts
– Phase transitions and critical phenomena in liquids and confined fluids
– Self assembly in complex liquids.– Biomolecules in solution
The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include:
– Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.)
– Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.)
– Light scattering (Rayleigh, Brillouin, PCS, etc.)
– Dielectric relaxation
– X-ray and neutron scattering and diffraction.
Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.