MACE-OFF:有机分子的短程可转移机器学习力场。

IF 14.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Dávid Péter Kovács,J Harry Moore,Nicholas J Browning,Ilyes Batatia,Joshua T Horton,Yixuan Pu,Venkat Kapil,William C Witt,Ioan-Bogdan Magdău,Daniel J Cole,Gábor Csányi
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引用次数: 0

摘要

50多年来,经典的经验力场一直主导着生物分子模拟。尽管它们广泛应用于药物发现、晶体结构预测和生物分子动力学,但它们通常缺乏第一性原理预测建模所需的准确性和可移植性。在本文中,我们介绍了MACE-OFF,这是一系列使用最先进的机器学习技术和用高水平量子力学理论计算的第一性原理参考数据创建的有机分子的短程可转移力场。MACE-OFF通过准确预测分子体系的各种气相和凝聚相性质,证明了短程模型的卓越能力。它可以对看不见的分子进行精确、易于收敛的二面体扭转扫描,并对分子晶体和液体(包括量子核效应)进行可靠的描述。我们进一步证明了MACE-OFF的能力,通过确定显式溶剂中的自由能表面,以及肽的折叠动力学和纳秒模拟完全溶剂化的蛋白质。这些发展使分子系统的第一性原理模拟能够以高精度和相对较低的计算成本用于更广泛的化学社区。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
MACE-OFF: Short-Range Transferable Machine Learning Force Fields for Organic Molecules.
Classical empirical force fields have dominated biomolecular simulations for over 50 years. Although widely used in drug discovery, crystal structure prediction, and biomolecular dynamics, they generally lack the accuracy and transferability required for first-principles predictive modeling. In this paper, we introduce MACE-OFF, a series of short-range transferable force fields for organic molecules created using state-of-the-art machine learning technology and first-principles reference data computed with a high level of quantum mechanical theory. MACE-OFF demonstrates the remarkable capabilities of short-range models by accurately predicting a wide variety of gas- and condensed-phase properties of molecular systems. It produces accurate, easy-to-converge dihedral torsion scans of unseen molecules as well as reliable descriptions of molecular crystals and liquids, including quantum nuclear effects. We further demonstrate the capabilities of MACE-OFF by determining free energy surfaces in explicit solvent as well as the folding dynamics of peptides and nanosecond simulations of a fully solvated protein. These developments enable first-principles simulations of molecular systems for the broader chemistry community at high accuracy and relatively low computational cost.
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来源期刊
CiteScore
24.40
自引率
6.00%
发文量
2398
审稿时长
1.6 months
期刊介绍: The flagship journal of the American Chemical Society, known as the Journal of the American Chemical Society (JACS), has been a prestigious publication since its establishment in 1879. It holds a preeminent position in the field of chemistry and related interdisciplinary sciences. JACS is committed to disseminating cutting-edge research papers, covering a wide range of topics, and encompasses approximately 19,000 pages of Articles, Communications, and Perspectives annually. With a weekly publication frequency, JACS plays a vital role in advancing the field of chemistry by providing essential research.
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