Giovanni Saraceno , Raktim Mukhopadhyay , Marianthi Markatou
{"title":"QuadratiK:用于在球体和拟合优度测试上聚类的Python和R包","authors":"Giovanni Saraceno , Raktim Mukhopadhyay , Marianthi Markatou","doi":"10.1016/j.softx.2025.102155","DOIUrl":null,"url":null,"abstract":"<div><div>We introduce <span>QuadratiK</span>, an open-source software, implemented in <span>R</span> and <span>Python</span>. <span>QuadratiK</span> supports normality tests, and two and <span><math><mi>k</mi></math></span>-sample tests, using kernel-based quadratic distances. The software also includes tests for uniformity on the <span><math><mi>d</mi></math></span>-dimensional sphere and a clustering algorithm using the Poisson kernel-based densities. Functions for generating random samples from these densities are included. These methods are encoded via object-oriented and extensively unit-tested implementations. <span>QuadratiK</span> offers graphical functions that enhance user experience by facilitating the validation, visualization, and interpretation of clustering results. We compare <span>QuadratiK</span> with related available libraries and provide illustrative code examples. In summary, <span>QuadratiK</span> offers a powerful suite of tools in <span>R</span> and <span>Python</span>, enabling researchers and practitioners to perform meaningful analyses and derive valid and reproducible inference across a wide range of fields. The <span>R</span><span><span><sup>3</sup></span></span> and <span>Python</span><span><span><sup>4</sup></span></span> codes are available under the GPL-3.0 license. Finally, we propose a dashboard application, a graphical user interface to the implemented methods, with the aim to facilitate the usage of the software among practitioners from different domains.</div></div>","PeriodicalId":21905,"journal":{"name":"SoftwareX","volume":"31 ","pages":"Article 102155"},"PeriodicalIF":2.4000,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"QuadratiK: A Python and R package for clustering on the sphere and goodness-of-fit tests\",\"authors\":\"Giovanni Saraceno , Raktim Mukhopadhyay , Marianthi Markatou\",\"doi\":\"10.1016/j.softx.2025.102155\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>We introduce <span>QuadratiK</span>, an open-source software, implemented in <span>R</span> and <span>Python</span>. <span>QuadratiK</span> supports normality tests, and two and <span><math><mi>k</mi></math></span>-sample tests, using kernel-based quadratic distances. The software also includes tests for uniformity on the <span><math><mi>d</mi></math></span>-dimensional sphere and a clustering algorithm using the Poisson kernel-based densities. Functions for generating random samples from these densities are included. These methods are encoded via object-oriented and extensively unit-tested implementations. <span>QuadratiK</span> offers graphical functions that enhance user experience by facilitating the validation, visualization, and interpretation of clustering results. We compare <span>QuadratiK</span> with related available libraries and provide illustrative code examples. In summary, <span>QuadratiK</span> offers a powerful suite of tools in <span>R</span> and <span>Python</span>, enabling researchers and practitioners to perform meaningful analyses and derive valid and reproducible inference across a wide range of fields. The <span>R</span><span><span><sup>3</sup></span></span> and <span>Python</span><span><span><sup>4</sup></span></span> codes are available under the GPL-3.0 license. Finally, we propose a dashboard application, a graphical user interface to the implemented methods, with the aim to facilitate the usage of the software among practitioners from different domains.</div></div>\",\"PeriodicalId\":21905,\"journal\":{\"name\":\"SoftwareX\",\"volume\":\"31 \",\"pages\":\"Article 102155\"},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2025-05-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"SoftwareX\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352711025001220\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, SOFTWARE ENGINEERING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"SoftwareX","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352711025001220","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
QuadratiK: A Python and R package for clustering on the sphere and goodness-of-fit tests
We introduce QuadratiK, an open-source software, implemented in R and Python. QuadratiK supports normality tests, and two and -sample tests, using kernel-based quadratic distances. The software also includes tests for uniformity on the -dimensional sphere and a clustering algorithm using the Poisson kernel-based densities. Functions for generating random samples from these densities are included. These methods are encoded via object-oriented and extensively unit-tested implementations. QuadratiK offers graphical functions that enhance user experience by facilitating the validation, visualization, and interpretation of clustering results. We compare QuadratiK with related available libraries and provide illustrative code examples. In summary, QuadratiK offers a powerful suite of tools in R and Python, enabling researchers and practitioners to perform meaningful analyses and derive valid and reproducible inference across a wide range of fields. The R3 and Python4 codes are available under the GPL-3.0 license. Finally, we propose a dashboard application, a graphical user interface to the implemented methods, with the aim to facilitate the usage of the software among practitioners from different domains.
期刊介绍:
SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.