QuadratiK:用于在球体和拟合优度测试上聚类的Python和R包

IF 2.4 4区 计算机科学 Q2 COMPUTER SCIENCE, SOFTWARE ENGINEERING
Giovanni Saraceno , Raktim Mukhopadhyay , Marianthi Markatou
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引用次数: 0

摘要

我们介绍QuadratiK,一个用R和Python实现的开源软件。QuadratiK使用基于核的二次距离支持正态性测试,以及两个和k个样本测试。该软件还包括在d维球体上的均匀性测试和使用基于泊松核密度的聚类算法。包括从这些密度生成随机样本的函数。这些方法是通过面向对象和广泛的单元测试实现进行编码的。QuadratiK提供图形功能,通过促进聚类结果的验证、可视化和解释来增强用户体验。我们将QuadratiK与相关的可用库进行比较,并提供说明性代码示例。总之,QuadratiK在R和Python中提供了一套强大的工具,使研究人员和从业者能够在广泛的领域中执行有意义的分析并得出有效和可重复的推断。R3和Python4代码在GPL-3.0许可下可用。最后,我们提出了一个仪表板应用程序,一个实现方法的图形用户界面,目的是方便不同领域的从业者使用该软件。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

QuadratiK: A Python and R package for clustering on the sphere and goodness-of-fit tests

QuadratiK: A Python and R package for clustering on the sphere and goodness-of-fit tests
We introduce QuadratiK, an open-source software, implemented in R and Python. QuadratiK supports normality tests, and two and k-sample tests, using kernel-based quadratic distances. The software also includes tests for uniformity on the d-dimensional sphere and a clustering algorithm using the Poisson kernel-based densities. Functions for generating random samples from these densities are included. These methods are encoded via object-oriented and extensively unit-tested implementations. QuadratiK offers graphical functions that enhance user experience by facilitating the validation, visualization, and interpretation of clustering results. We compare QuadratiK with related available libraries and provide illustrative code examples. In summary, QuadratiK offers a powerful suite of tools in R and Python, enabling researchers and practitioners to perform meaningful analyses and derive valid and reproducible inference across a wide range of fields. The R3 and Python4 codes are available under the GPL-3.0 license. Finally, we propose a dashboard application, a graphical user interface to the implemented methods, with the aim to facilitate the usage of the software among practitioners from different domains.
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来源期刊
SoftwareX
SoftwareX COMPUTER SCIENCE, SOFTWARE ENGINEERING-
CiteScore
5.50
自引率
2.90%
发文量
184
审稿时长
9 weeks
期刊介绍: SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.
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