利用分子动力学模拟研究温度对不同浓度胆固醇生物纳米膜性能的影响

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Armin Jarahi Khameneh , Azadeh Kordzadeh , Abbas Rastgoo , Amin Hadi
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引用次数: 0

摘要

细胞膜是细胞的最外层边界,它的作用是保护细胞。药物必须首先通过细胞膜进入细胞;因此,研究双层膜的性质是非常重要的,可以提供有关药物传递过程的重要信息。本文采用分子动力学模拟方法,研究了温度升高对含0%、10%、30%和50%胆固醇双层膜性能的影响。并根据胆固醇的百分比选择脂质双分子层的相变温度。结果表明,随着温度的升高,膜由凝胶相转变为流体相。此外,温度的升高导致每脂质面积的增加和序参量的降低,其原因是分子动能的增加。温度较高的流体相膜的扩散系数高于凝胶相膜。温度的升高使胆固醇含量为0%的膜的序参量下降24%,而胆固醇含量为50%的膜的结构特性随着温度的升高几乎保持不变,表明膜具有刚性。随着胆固醇浓度从0%增加到50%,电场作用下孔隙形成时间从0.26 ns增加到8.46 ns。这些结果将有助于药物传递和治疗过程的发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Investigation of the temperature effect on the properties of biological nanomembranes with different concentrations of cholesterol using molecular dynamics simulation
The cell membrane is the outermost boundary of the cell, and its role is to protect the cell. Drugs must first pass through the membrane to enter the cell; therefore, investigating the properties of the bilayer membrane is of great importance and can provide important information regarding drug delivery processes. In this study, the effect of increasing temperature on the properties of bilayer membranes with 0 %, 10 %, 30 %, and 50 % cholesterol was investigated using molecular dynamics simulation. Moreover, the phase transition temperature of the lipid bilayer was selected based on the percentages of cholesterol. The results indicated that with increasing temperature, the membrane changed from gel phase to fluid phase. Moreover, a rise in temperature led to an increase in the area per lipid and a decrease in the order parameter, the reason for which was the increase in the kinetic energy of the molecules. The fluid phase membrane, which is at a higher temperature, had a higher diffusion coefficient than the gel phase membrane. The increase in the temperature caused the membrane with 0 % cholesterol to experience a 24 % decrease in the order parameter, while the structural properties of the membrane with 50 % cholesterol are almost constant with increasing temperature, indicating the rigidity of the membrane. With the increase in cholesterol concentration from 0 % to 50 %, the time for pore formation under the electric field increased from 0.26 ns to 8.46 ns. These results will be helpful in the development of drug delivery and therapeutic processes.
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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