Sirui Ding, Yafen Liang, Chia-Yuan Chang, Cheryl Brown, Xiaoqian Jiang, Xia Hu, Na Zou
{"title":"用机器学习发现心脏移植原发性移植物功能障碍中重要的供体-受体危险因素和相互作用。","authors":"Sirui Ding, Yafen Liang, Chia-Yuan Chang, Cheryl Brown, Xiaoqian Jiang, Xia Hu, Na Zou","doi":"10.1093/jamia/ocaf066","DOIUrl":null,"url":null,"abstract":"<p><strong>Objectives: </strong>Primary graft dysfunction (PGD) is an essential outcome after the heart transplant, which causes severe complications and symptoms for recipients. The in advance prediction of PGD can help the transplant physician better manage the risks of PGD occurrence for patients. Domain experts have identified some important risk factors leading to PGD. However, a widely accepted PGD prediction method is lacking from a computational perspective. In this work, we focus on the prediction of PGD after heart transplant with machine learning (ML).</p><p><strong>Materials and methods: </strong>With the strong power of artificial intelligence, we propose to design a ML algorithm to precisely predict the PGD with the donor and recipient features. Moreover, we apply the computational method to automatically identify important features and interactions between them.</p><p><strong>Results: </strong>To evaluate the effectiveness of the ML algorithm in PGD prediction, we curated a PGD patients' cohort from the United Network for Organ Sharing database, which contains 8008 recipients. 5 commonly used ML models are used for performance comparison. The multi-layer perceptron model achieves superior performance, as measured by area under the receiver operating characteristic curve (AUROC), at 0.868. We identify the top 20 important features and interactions between donors and recipients. Clinical analyses are conducted on the identified features and interactions.</p><p><strong>Discussion: </strong>We summarize the contributions of this work from three aspects including methodology, clinical analysis, and insights. We discuss the limitations of this work on data, model, and real-world implementation perspectives. Additionally, we further discuss the future directions to extend this work to more organ types and diseases.</p><p><strong>Conclusion: </strong>In summary, ML has promising applications in PGD prediction as a computational tool for clinical study. We can also use the ML model to help us identify and discover new risk factors and interactions between donor and recipient.</p>","PeriodicalId":50016,"journal":{"name":"Journal of the American Medical Informatics Association","volume":" ","pages":"1101-1109"},"PeriodicalIF":4.6000,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12199347/pdf/","citationCount":"0","resultStr":"{\"title\":\"Discover important donor-recipient risk factors and interactions in heart transplant primary graft dysfunction with machine learning.\",\"authors\":\"Sirui Ding, Yafen Liang, Chia-Yuan Chang, Cheryl Brown, Xiaoqian Jiang, Xia Hu, Na Zou\",\"doi\":\"10.1093/jamia/ocaf066\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objectives: </strong>Primary graft dysfunction (PGD) is an essential outcome after the heart transplant, which causes severe complications and symptoms for recipients. The in advance prediction of PGD can help the transplant physician better manage the risks of PGD occurrence for patients. Domain experts have identified some important risk factors leading to PGD. However, a widely accepted PGD prediction method is lacking from a computational perspective. In this work, we focus on the prediction of PGD after heart transplant with machine learning (ML).</p><p><strong>Materials and methods: </strong>With the strong power of artificial intelligence, we propose to design a ML algorithm to precisely predict the PGD with the donor and recipient features. Moreover, we apply the computational method to automatically identify important features and interactions between them.</p><p><strong>Results: </strong>To evaluate the effectiveness of the ML algorithm in PGD prediction, we curated a PGD patients' cohort from the United Network for Organ Sharing database, which contains 8008 recipients. 5 commonly used ML models are used for performance comparison. The multi-layer perceptron model achieves superior performance, as measured by area under the receiver operating characteristic curve (AUROC), at 0.868. We identify the top 20 important features and interactions between donors and recipients. Clinical analyses are conducted on the identified features and interactions.</p><p><strong>Discussion: </strong>We summarize the contributions of this work from three aspects including methodology, clinical analysis, and insights. We discuss the limitations of this work on data, model, and real-world implementation perspectives. Additionally, we further discuss the future directions to extend this work to more organ types and diseases.</p><p><strong>Conclusion: </strong>In summary, ML has promising applications in PGD prediction as a computational tool for clinical study. We can also use the ML model to help us identify and discover new risk factors and interactions between donor and recipient.</p>\",\"PeriodicalId\":50016,\"journal\":{\"name\":\"Journal of the American Medical Informatics Association\",\"volume\":\" \",\"pages\":\"1101-1109\"},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2025-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12199347/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of the American Medical Informatics Association\",\"FirstCategoryId\":\"91\",\"ListUrlMain\":\"https://doi.org/10.1093/jamia/ocaf066\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INFORMATION SYSTEMS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of the American Medical Informatics Association","FirstCategoryId":"91","ListUrlMain":"https://doi.org/10.1093/jamia/ocaf066","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INFORMATION SYSTEMS","Score":null,"Total":0}
Discover important donor-recipient risk factors and interactions in heart transplant primary graft dysfunction with machine learning.
Objectives: Primary graft dysfunction (PGD) is an essential outcome after the heart transplant, which causes severe complications and symptoms for recipients. The in advance prediction of PGD can help the transplant physician better manage the risks of PGD occurrence for patients. Domain experts have identified some important risk factors leading to PGD. However, a widely accepted PGD prediction method is lacking from a computational perspective. In this work, we focus on the prediction of PGD after heart transplant with machine learning (ML).
Materials and methods: With the strong power of artificial intelligence, we propose to design a ML algorithm to precisely predict the PGD with the donor and recipient features. Moreover, we apply the computational method to automatically identify important features and interactions between them.
Results: To evaluate the effectiveness of the ML algorithm in PGD prediction, we curated a PGD patients' cohort from the United Network for Organ Sharing database, which contains 8008 recipients. 5 commonly used ML models are used for performance comparison. The multi-layer perceptron model achieves superior performance, as measured by area under the receiver operating characteristic curve (AUROC), at 0.868. We identify the top 20 important features and interactions between donors and recipients. Clinical analyses are conducted on the identified features and interactions.
Discussion: We summarize the contributions of this work from three aspects including methodology, clinical analysis, and insights. We discuss the limitations of this work on data, model, and real-world implementation perspectives. Additionally, we further discuss the future directions to extend this work to more organ types and diseases.
Conclusion: In summary, ML has promising applications in PGD prediction as a computational tool for clinical study. We can also use the ML model to help us identify and discover new risk factors and interactions between donor and recipient.
期刊介绍:
JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.