用机器学习发现心脏移植原发性移植物功能障碍中重要的供体-受体危险因素和相互作用。

IF 4.6 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Sirui Ding, Yafen Liang, Chia-Yuan Chang, Cheryl Brown, Xiaoqian Jiang, Xia Hu, Na Zou
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引用次数: 0

摘要

目的:原发性移植物功能障碍(PGD)是心脏移植术后的一个重要结果,它会给受者带来严重的并发症和症状。PGD的提前预测可以帮助移植医师更好地管理患者发生PGD的风险。领域专家已经确定了一些导致PGD的重要风险因素。然而,从计算的角度来看,缺乏一种被广泛接受的PGD预测方法。在这项工作中,我们专注于用机器学习(ML)预测心脏移植后的PGD。材料和方法:利用人工智能的强大力量,我们提出设计一种ML算法来精确预测具有供体和受体特征的PGD。此外,我们应用计算方法来自动识别重要特征和它们之间的相互作用。结果:为了评估ML算法在PGD预测中的有效性,我们从美国器官共享网络数据库中挑选了一个包含8008名接受者的PGD患者队列。使用5种常用的ML模型进行性能比较。多层感知器模型获得了更优的性能,通过receiver operating characteristic curve (AUROC)下的面积来衡量,其值为0.868。我们确定了20个最重要的特征以及捐赠者和接受者之间的相互作用。临床分析对识别的特征和相互作用进行。讨论:我们从方法论、临床分析和见解三个方面总结了本工作的贡献。我们讨论了这项工作在数据、模型和现实世界实现方面的局限性。此外,我们进一步讨论了将这项工作扩展到更多器官类型和疾病的未来方向。结论:ML作为临床研究的计算工具,在PGD预测中具有广阔的应用前景。我们还可以使用机器学习模型来帮助我们识别和发现新的风险因素以及供体和受体之间的相互作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Discover important donor-recipient risk factors and interactions in heart transplant primary graft dysfunction with machine learning.

Objectives: Primary graft dysfunction (PGD) is an essential outcome after the heart transplant, which causes severe complications and symptoms for recipients. The in advance prediction of PGD can help the transplant physician better manage the risks of PGD occurrence for patients. Domain experts have identified some important risk factors leading to PGD. However, a widely accepted PGD prediction method is lacking from a computational perspective. In this work, we focus on the prediction of PGD after heart transplant with machine learning (ML).

Materials and methods: With the strong power of artificial intelligence, we propose to design a ML algorithm to precisely predict the PGD with the donor and recipient features. Moreover, we apply the computational method to automatically identify important features and interactions between them.

Results: To evaluate the effectiveness of the ML algorithm in PGD prediction, we curated a PGD patients' cohort from the United Network for Organ Sharing database, which contains 8008 recipients. 5 commonly used ML models are used for performance comparison. The multi-layer perceptron model achieves superior performance, as measured by area under the receiver operating characteristic curve (AUROC), at 0.868. We identify the top 20 important features and interactions between donors and recipients. Clinical analyses are conducted on the identified features and interactions.

Discussion: We summarize the contributions of this work from three aspects including methodology, clinical analysis, and insights. We discuss the limitations of this work on data, model, and real-world implementation perspectives. Additionally, we further discuss the future directions to extend this work to more organ types and diseases.

Conclusion: In summary, ML has promising applications in PGD prediction as a computational tool for clinical study. We can also use the ML model to help us identify and discover new risk factors and interactions between donor and recipient.

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来源期刊
Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association 医学-计算机:跨学科应用
CiteScore
14.50
自引率
7.80%
发文量
230
审稿时长
3-8 weeks
期刊介绍: JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.
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