{"title":"基于对偶反馈控制的资源耦合多模块基因电路降噪。","authors":"Suchana Chakravarty, Rong Zhang, Xiao-Jun Tian","doi":"10.1109/cdc56724.2024.10886586","DOIUrl":null,"url":null,"abstract":"<p><p>Gene circuits within the same host cell often experience coupling, stemming from the competition for limited resources during transcriptional and translational processes. This resource competition introduces an additional layer of noise to gene expression. Here we present three multi-module antithetic control strategies: negatively competitive regulation (NCR) controller, alongside local and global controllers, aimed at reducing the gene expression noise within the context of resource competition. Through stochastic simulations and fluctuation-dissipation theorem (FDT) analysis, our findings highlight the superior performance of the NCR antithetic controller in reducing noise levels. Our research provides an effective control strategy for attenuating resource-driven noise and offers insight into the development of robust gene circuits.</p>","PeriodicalId":74517,"journal":{"name":"Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control","volume":"2024 ","pages":"5566-5571"},"PeriodicalIF":0.0000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11987709/pdf/","citationCount":"0","resultStr":"{\"title\":\"Noise Reduction in Resource-Coupled Multi-Module Gene Circuits through Antithetic Feedback Control.\",\"authors\":\"Suchana Chakravarty, Rong Zhang, Xiao-Jun Tian\",\"doi\":\"10.1109/cdc56724.2024.10886586\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Gene circuits within the same host cell often experience coupling, stemming from the competition for limited resources during transcriptional and translational processes. This resource competition introduces an additional layer of noise to gene expression. Here we present three multi-module antithetic control strategies: negatively competitive regulation (NCR) controller, alongside local and global controllers, aimed at reducing the gene expression noise within the context of resource competition. Through stochastic simulations and fluctuation-dissipation theorem (FDT) analysis, our findings highlight the superior performance of the NCR antithetic controller in reducing noise levels. Our research provides an effective control strategy for attenuating resource-driven noise and offers insight into the development of robust gene circuits.</p>\",\"PeriodicalId\":74517,\"journal\":{\"name\":\"Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control\",\"volume\":\"2024 \",\"pages\":\"5566-5571\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11987709/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/cdc56724.2024.10886586\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/cdc56724.2024.10886586","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Noise Reduction in Resource-Coupled Multi-Module Gene Circuits through Antithetic Feedback Control.
Gene circuits within the same host cell often experience coupling, stemming from the competition for limited resources during transcriptional and translational processes. This resource competition introduces an additional layer of noise to gene expression. Here we present three multi-module antithetic control strategies: negatively competitive regulation (NCR) controller, alongside local and global controllers, aimed at reducing the gene expression noise within the context of resource competition. Through stochastic simulations and fluctuation-dissipation theorem (FDT) analysis, our findings highlight the superior performance of the NCR antithetic controller in reducing noise levels. Our research provides an effective control strategy for attenuating resource-driven noise and offers insight into the development of robust gene circuits.