{"title":"大麻素与GABAA受体结合的结构和动力学。","authors":"Lautaro Damian Alvarez, N R Carina Alves","doi":"10.1002/prot.26831","DOIUrl":null,"url":null,"abstract":"<p><p>Research on medical cannabis is progressing, with several cannabinoids emerging as promising compounds for clinical use. The available evidence suggests that cannabinoids may modulate the glycine receptor (GlyR) and GABA<sub>A</sub> receptor, which are part of the pentameric ligand-gated ion channels (pLGICs) superfamily and facilitate chemical communication in the nervous system. In a previous study, we employed molecular dynamics (MD) simulations to elucidate the dynamics of the GlyR/Δ<sup>9</sup>-tetrahydrocannabinol (THC) complex and successfully identified a representative binding mode. Given the structural similarity between GlyR and GABA<sub>A</sub>R, we employed a similar strategy to investigate GABA<sub>A</sub>R-cannabinoid interactions. We initially assessed the binding mode of THC to GABA<sub>A</sub>R-α1β2γ2 at the equivalent binding site of the GlyR-that is, on its two α-subunits-as well as the impact of this binding on the channel's dimensions. Our results indicate, first, that the binding modes of THC to GABA<sub>A</sub>R and GlyR exhibit comparable characteristics and, second, that THC may function as a potentiator of GABA activity due to a significant opening of the channel pore. Additionally, we aimed to reduce the overall computational cost associated with exploring binding modes. To this end, we developed and validated a simplified model comprising a single-monomer system for cannabinoid binding studies. This model proved to be accurate and cost-effective, accelerating the in silico screening process and allowing for the study of GABA<sub>A</sub>R-cannabinoid binding through docking and MD simulations. Moreover, the analysis of different cannabinoids in this system suggests that cannabigerol (CBG) and cannabichromene (CBC) could act as ligands for GABA<sub>A</sub>R, opening unexplored avenues for research.</p>","PeriodicalId":56271,"journal":{"name":"Proteins-Structure Function and Bioinformatics","volume":" ","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Structure and Dynamics of Cannabinoid Binding to the GABA<sub>A</sub> Receptor.\",\"authors\":\"Lautaro Damian Alvarez, N R Carina Alves\",\"doi\":\"10.1002/prot.26831\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Research on medical cannabis is progressing, with several cannabinoids emerging as promising compounds for clinical use. The available evidence suggests that cannabinoids may modulate the glycine receptor (GlyR) and GABA<sub>A</sub> receptor, which are part of the pentameric ligand-gated ion channels (pLGICs) superfamily and facilitate chemical communication in the nervous system. In a previous study, we employed molecular dynamics (MD) simulations to elucidate the dynamics of the GlyR/Δ<sup>9</sup>-tetrahydrocannabinol (THC) complex and successfully identified a representative binding mode. Given the structural similarity between GlyR and GABA<sub>A</sub>R, we employed a similar strategy to investigate GABA<sub>A</sub>R-cannabinoid interactions. We initially assessed the binding mode of THC to GABA<sub>A</sub>R-α1β2γ2 at the equivalent binding site of the GlyR-that is, on its two α-subunits-as well as the impact of this binding on the channel's dimensions. Our results indicate, first, that the binding modes of THC to GABA<sub>A</sub>R and GlyR exhibit comparable characteristics and, second, that THC may function as a potentiator of GABA activity due to a significant opening of the channel pore. Additionally, we aimed to reduce the overall computational cost associated with exploring binding modes. To this end, we developed and validated a simplified model comprising a single-monomer system for cannabinoid binding studies. This model proved to be accurate and cost-effective, accelerating the in silico screening process and allowing for the study of GABA<sub>A</sub>R-cannabinoid binding through docking and MD simulations. Moreover, the analysis of different cannabinoids in this system suggests that cannabigerol (CBG) and cannabichromene (CBC) could act as ligands for GABA<sub>A</sub>R, opening unexplored avenues for research.</p>\",\"PeriodicalId\":56271,\"journal\":{\"name\":\"Proteins-Structure Function and Bioinformatics\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2025-04-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proteins-Structure Function and Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1002/prot.26831\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteins-Structure Function and Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/prot.26831","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Structure and Dynamics of Cannabinoid Binding to the GABAA Receptor.
Research on medical cannabis is progressing, with several cannabinoids emerging as promising compounds for clinical use. The available evidence suggests that cannabinoids may modulate the glycine receptor (GlyR) and GABAA receptor, which are part of the pentameric ligand-gated ion channels (pLGICs) superfamily and facilitate chemical communication in the nervous system. In a previous study, we employed molecular dynamics (MD) simulations to elucidate the dynamics of the GlyR/Δ9-tetrahydrocannabinol (THC) complex and successfully identified a representative binding mode. Given the structural similarity between GlyR and GABAAR, we employed a similar strategy to investigate GABAAR-cannabinoid interactions. We initially assessed the binding mode of THC to GABAAR-α1β2γ2 at the equivalent binding site of the GlyR-that is, on its two α-subunits-as well as the impact of this binding on the channel's dimensions. Our results indicate, first, that the binding modes of THC to GABAAR and GlyR exhibit comparable characteristics and, second, that THC may function as a potentiator of GABA activity due to a significant opening of the channel pore. Additionally, we aimed to reduce the overall computational cost associated with exploring binding modes. To this end, we developed and validated a simplified model comprising a single-monomer system for cannabinoid binding studies. This model proved to be accurate and cost-effective, accelerating the in silico screening process and allowing for the study of GABAAR-cannabinoid binding through docking and MD simulations. Moreover, the analysis of different cannabinoids in this system suggests that cannabigerol (CBG) and cannabichromene (CBC) could act as ligands for GABAAR, opening unexplored avenues for research.
期刊介绍:
PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.