空间熵驱动可转移质粒的维持和传播。

IF 8.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Wenzhi Xue, Juken Hong, Runmeng Zhao, Huaxiong Yao, Yi Zhang, Zhuojun Dai, Teng Wang
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引用次数: 0

摘要

可转移质粒是一种主要类型的移动遗传因子(MGEs),其传播是抗生素耐药性暴发的主要驱动因素之一。虽然质粒在良好混合环境中的持续状态已被广泛研究,但自然界中大多数微生物群具有空间异质性。然而,我们关于空间景观如何影响质粒维持和传播的知识仍然有限。在这里,我们建立了一个理论框架,描述质粒在多个斑块的元群落上的传播。通过分析随机生成的景观上的基因流动动力学,我们发现质粒的生存和扩散是由景观的一个简单特征——空间熵决定的。熵的减少加速了质粒范围的扩展,并允许许多经典理论预测会丢失的质粒的全局维持。通过实验验证了熵效应在大肠杆菌元群落中传递共轭质粒的效果。我们进一步研究了大量的原核生物基因组,并表明来自低熵环境的原核生物确实携带更丰富的MGEs和抗生素抗性基因。我们的工作为管理和控制抗微生物药物耐药性提供了重要见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Spatial entropy drives the maintenance and dissemination of transferable plasmids.

The dissemination of transferable plasmids, a major type of mobile genetic elements (MGEs), is one main driver of antibiotic resistance outbreaks. While the plasmid persistence condition in well-mixed environments has been extensively studied, most microbiota in nature are spatially heterogeneous. However, our knowledge regarding how spatial landscape shapes plasmid maintenance and dissemination remains limited. Here we establish a theoretical framework describing plasmid spread over a metacommunity of multiple patches. By analyzing the gene flow dynamics on randomly generated landscapes, we show that plasmid survival and dispersal are dictated by a simple feature of the landscape, spatial entropy. Reducing entropy speeds up plasmid range expansion and allows the global maintenance of many plasmids that are predicted to be lost by classic theories. The entropy's effects are experimentally validated in E. coli metacommunities transferring a conjugative plasmid. We further examine a vast collection of prokaryotic genomes and show that prokaryotes from low-entropy environments indeed carry more abundant MGEs and antibiotic resistance genes. Our work provides critical insights into the management and control of antimicrobial resistance.

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来源期刊
Molecular Systems Biology
Molecular Systems Biology 生物-生化与分子生物学
CiteScore
18.50
自引率
1.00%
发文量
62
审稿时长
6-12 weeks
期刊介绍: Systems biology is a field that aims to understand complex biological systems by studying their components and how they interact. It is an integrative discipline that seeks to explain the properties and behavior of these systems. Molecular Systems Biology is a scholarly journal that publishes top-notch research in the areas of systems biology, synthetic biology, and systems medicine. It is an open access journal, meaning that its content is freely available to readers, and it is peer-reviewed to ensure the quality of the published work.
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