Complete极度濒危的亚洲王秃鹫(Sarcogypscalvus)(鸟类,鹰形目,鹰科)的有丝分裂基因组:进化的见解和比较分析。

IF 1.3 3区 生物学 Q2 ZOOLOGY
ZooKeys Pub Date : 2025-04-08 eCollection Date: 2025-01-01 DOI:10.3897/zookeys.1234.138722
Wannapol Buthasane, Sithichoke Tangphatsornruang, Piroon Jenjaroenpun, Thidathip Wongsurawat, Saowaphang Sanannu, Vorasuk Shotelersuk, Gunnaporn Suriyaphol
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引用次数: 0

摘要

亚洲王秃鹫(Sarcogypscalvus),也被称为红头秃鹫,是一种面临严重人口下降的旧大陆秃鹫(Gypini)。本研究的目的是组装S.calvus的完整有丝分裂基因组,探索其系统发育关系,估计分化时间,并研究遗传距离和氨基酸取代。从雌性小牛的血液中提取基因组DNA,重新组装有丝分裂基因组。进行了系统发育分析和配对遗传距离分析,将S.calvus与吉尼(Gypini)其他成员、新世界秃鹫(Cathartidae)和其他多种鸟类进行了比较。组装的有丝分裂基因组全长17750个碱基对,包括13个蛋白质编码基因(PCGs)、22个转移RNA基因、2个核糖体RNA基因和2个控制区。除了细胞色素c氧化酶亚基1 (COX1)使用GTG外,大多数PCGs使用ATG起始密码子。系统发育分析表明,S.calvus与吉卜尼的其他成员有密切的遗传关系,估计分化时间为1670万年前。遗传距离分析表明,S.calvus与其他Gypini, Spilornischeela和Circaetuspectoralis (Circaetini))的亲缘关系比Cathartidae亲缘关系更近。吉吉鱼和Cathartidae之间的保守氨基酸替换主要发生在nadh -泛醌氧化还原酶链1 (ND1)基因上。该研究提供了首个完整的小牛有丝分裂基因组,为其基因组结构、进化史和遗传关系提供了新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Complete mitogenome of the critically endangered Asian king vulture (Sarcogypscalvus) (Aves, Accipitriformes, Accipitridae): evolutionary insights and comparative analysis.

The Asian king vulture (Sarcogypscalvus), also known as the red-headed vulture, is an Old World vulture (Gypini) facing severe population declines. This study aimed to assemble the complete mitogenome of S.calvus, explore its phylogenetic relationships, estimate divergence times, and examine genetic distances and amino acid substitutions. The mitogenome was de novo assembled from genomic DNA extracted from the blood of a female S.calvus. Phylogenetic and pairwise genetic distance analyses were conducted, comparing S.calvus with other members of Gypini, New World vultures (Cathartidae) and various other birds. The assembled mitogenome was 17,750 base pairs in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and two control regions. Most PCGs used the ATG start codon, except for cytochrome c oxidase subunit 1 (COX1), which employed GTG. Phylogenetic analysis revealed a close genetic relationship between S.calvus and other members of Gypini, with an estimated divergence time of 16.7 million years ago. Genetic distance analysis indicated that S.calvus was more closely related to other Gypini, as well as to Spilornischeela and Circaetuspectoralis (Circaetini)), than to Cathartidae. Conserved amino acid substitutions between Gypini and Cathartidae were primarily observed in the NADH-ubiquinone oxidoreductase chain 1 (ND1) gene. This study provided the first complete mitogenome of S.calvus, offering new insights into its genomic structure, evolutionary history, and genetic relationships.

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来源期刊
ZooKeys
ZooKeys 生物-动物学
CiteScore
2.70
自引率
15.40%
发文量
400
审稿时长
3 months
期刊介绍: ZooKeys is a peer-reviewed, open-access, online and print, rapidly produced journal launched to support free exchange of ideas and information in systematic zoology, phylogeny and biogeography. All papers can be freely copied, downloaded, printed and distributed at no charge. Authors and readers are thus encouraged to post the pdf files of published papers on homepages or elsewhere to expedite distribution. There is no charge for color.
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