二硫垂相关lncrna能准确预测子宫内膜癌患者的生存和免疫治疗反应。

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Lin Hong, Ya-Xing Fang, Tao Li, Yu-Feng He, Qin-Qin Jin, Xiao Xu, Shu-Guang Zhou
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引用次数: 0

摘要

子宫内膜癌(ECUC)是女性常见的恶性肿瘤。二硫下垂是最近发现的一种细胞死亡形式,其特征是SLC7A11表达升高和葡萄糖可用性受限,使其成为潜在的癌症治疗靶点。在本研究中,从TCGA数据库中获取EC样本的临床数据和转录组信息。通过单因素/LASSO/多因素回归分析,建立了与二硫中毒相关的lncrna (drl)预后特征。通过GO、KEGG和GSEA分析确定细胞通路。评估免疫浸润和肿瘤突变负荷(TMB)。利用TIDE算法和GDSC数据库预测患者对免疫治疗和抗癌药物的反应。最后,使用RT-qPCR检测二硫中毒相关lncrna的表达。结果:在这项研究中,我们鉴定了524个与双硫垂相关的lncrna,并建立了一个由5个drl (AC022960.1、PRDX6-AS1、EMSLR、AL359715.3、AC103563.9)组成的预后特征。我们的预后特征有效地将EC患者分为高危组和低危组。与高危组相比,低危组患者的总生存期(OS)更好。此外,使用ROC曲线和一致性指数(C-index)图来评估我们的预后特征的准确性。结果显示,1年、3年和5年生存期的AUC值分别为0.676、0.712和0.722,具有较高的预测准确性。进一步分析显示,高风险组和低风险组在TMB、药物敏感性和免疫细胞浸润方面存在显著差异。PCR结果显示,PRDX6-AS1、EMSLR、AL359715.3、AC103563.9在EC细胞中表达上调,而AC022960.1表达下调。总之,我们开发了一种能够预测TMB、预后、免疫细胞浸润模式以及EC患者对免疫治疗反应的drl特征。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The disulfidptosis-related lncRNAs can predict survival and immunotherapy response accurately in endometrial carcinoma.

Endometrial cancer of the uterine corpus (ECUC) is a common malignancy among females. Disulfidptosis, a recently identified form of cellular death, is characterized by elevated SLC7A11 expression and limited glucose availability, making it a potential cancer treatment target. In this research, clinical data and transcriptome information from EC samples were accessed from the TCGA database. A disulfidptosis-related lncRNAs(DRLs) prognostic signature was developed by univariate/LASSO/multivariate regression analyses. Cellular pathways were identified through GO, KEGG, and GSEA analyses. Immune infiltration as well as tumor mutational burden (TMB) were evaluated. The TIDE algorithm and the GDSC database were utilized to predict how patients reacted to immunotherapy as well as anticancer drugs. Finally, the expressions of disulfidptosis-related lncRNAs were measured using RT-qPCR. Results: In this study, we identified 524 disulfidptosis-related lncRNAs and developed a prognostic signature consisting of five DRLs (AC022960.1, PRDX6-AS1, EMSLR, AL359715.3, AC103563.9). Our prognostic signature effectively stratified EC patients into high- and low-risk groups. Compared with the high-risk group, patients in the low-risk group exhibited better overall survival (OS). Additionally, ROC curves and concordance index (C-index) plots were used to assess the accuracy of our prognostic signature. The results demonstrated that the AUC values for 1-, 3-, and 5-year survival were 0.676, 0.712, and 0.722, respectively, indicating high predictive accuracy. Further analysis revealed significant differences between high- and low-risk groups in terms of TMB, drug sensitivity, and immune cell infiltration. PCR results showed that PRDX6-AS1, EMSLR, AL359715.3, and AC103563.9 were upregulated in EC cells, whereas AC022960.1 was downregulated. In conclusion, we developed a DRLs signature capable of predicting the TMB, prognosis, and immunological cell infiltration patterns, as well as the reactions to immunotherapy in EC patients.

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来源期刊
Cellular and molecular biology
Cellular and molecular biology 生物-生化与分子生物学
CiteScore
1.60
自引率
12.50%
发文量
331
期刊介绍: Cellular and Molecular Biology publishes original articles, reviews, short communications, methods, meta-analysis notes, letters to editor and comments in the interdisciplinary science of Cellular and Molecular Biology linking and integrating molecular biology, biophysics, biochemistry, enzymology, physiology and biotechnology in a dynamic cell and tissue biology environment, applied to human, animals, plants tissues as well to microbial and viral cells. The journal Cellular and Molecular Biology is therefore open to intense interdisciplinary exchanges in medical, dental, veterinary, pharmacological, botanical and biological researches for the demonstration of these multiple links.
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