MIPD:分子,图像和临床表型集成数据库。

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Jiaojiao Zhao, Min Wu, Meihua Wan, Xue Li, Jie Li, Qin Liu, Minghao Xiong, Mengjie Tu, Jun Zhou, Shilin Li, Jie Zhang, Jiangping Fu, Yin Zhang, Chungang Zhao, Litong Qin, Xue Yang, Hong Zhao, Yan Zhang, Fanxin Zeng
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引用次数: 0

摘要

由于肿瘤的异质性,一部分患者不能从目前的治疗策略中获益。然而,对影像学特征、遗传分子和临床表型的综合分析可以表征肿瘤的异质性,从而开发出更加个性化的治疗方法。尽管具有潜力,但跨模式数据库仍未得到充分开发。为了弥补这一空白,我们建立了一个包含9965个基因、5449个蛋白质、1121个代谢物、283个通路、854个成像特征和73个结直肠癌患者临床因素的综合数据库。该数据库识别与临床表型相关的显著不同的分子和成像特征,并提供基于这些特征的生存分析。此外,它还提供遗传分子注释,肿瘤和正常组织之间的比较表达水平,与遗传分子相关的成像特征,以及用于预测基因表达水平的基于成像的模型。此外,该数据库突出了遗传分子、临床因素和影像学特征之间的相关性。总之,我们提出了MIPD(分子、成像和临床表型相关数据库),这是一个用户友好的、互动的、专门的平台,可在http://corgenerf.com上访问。MIPD通过提供查询、浏览、搜索、可视化和下载功能,促进了跨模式数据的可解释性,从而为推进结直肠癌的精准医学提供了宝贵的资源。数据库地址:http://corgenerf。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database.

Due to tumor heterogeneity, a subset of patients fails to benefit from current treatment strategies. However, an integrated analysis of imaging features, genetic molecules, and clinical phenotypes can characterize tumor heterogeneity, enabling the development of more personalized treatment approaches. Despite its potential, cross-modal databases remain underexplored. To address this gap, we established a comprehensive database encompassing 9965 genes, 5449 proteins, 1121 metabolites, 283 pathways, 854 imaging features, and 73 clinical factors from colorectal cancer patients. This database identifies significantly distinct molecules and imaging features associated with clinical phenotypes and provides survival analysis based on these features. Additionally, it offers genetic molecule annotations, comparative expression levels between tumor and normal tissues, imaging features linked to genetic molecules, and imaging-based models for predicting gene expression levels. Furthermore, the database highlights correlations between genetic molecules, clinical factors, and imaging features. In summary, we present MIPD (Molecules, Imaging, and Clinical Phenotype Correlation Database), a user-friendly, interactive, and specialized platform accessible at http://corgenerf.com. MIPD facilitates the interpretability of cross-modal data by providing query, browse, search, visualization, and download functionalities, thereby offering a valuable resource for advancing precision medicine in colorectal cancer. Database URL: http://corgenerf.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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