评估神经网络和分子动力学模拟在预测有机小分子粘度中的有效性。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2025-05-08 Epub Date: 2025-04-23 DOI:10.1021/acs.jpcb.4c08757
Tianle Yue, Danh Nguyen, Vikas Varshney, Ying Li
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引用次数: 0

摘要

粘度是影响广泛应用的关键材料特性,包括三维(3D)打印、润滑剂和溶剂。然而,测量粘度的实验方法面临着诸如处理多个样品、高成本和有限的化合物可用性等挑战。为了解决这些限制,我们开发了用于小有机分子粘度预测的计算模型,利用机器学习(ML)和非平衡分子动力学(NEMD)模拟。我们的机器学习框架,包括前馈神经网络(FNN)和物理信息神经网络(PINN),是基于从文献中编译的最大的小分子粘度数据集。特别是,PINN模型通过一个四参数模型结合了温度依赖性,允许直接预测连续的温度依赖性粘度曲线。ML模型在广泛的温度范围内对各种有机化合物的粘度表现出卓越的预测精度。模型的外部验证进一步证实,ML预测模型在预测不同有机分子和温度范围内的粘度方面优于NEMD方法。这突出了ML模型克服传统MD模拟局限性的潜力,传统MD模拟通常难以达到特定分子或温度范围的准确性。我们进一步的特征重要性分析显示分子结构和粘度之间有很强的相关性。我们强调了子结构在决定粘度中的关键作用,为具有定制粘度的材料设计提供了更深入的分子见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Assessing the Effectiveness of Neural Networks and Molecular Dynamics Simulations in Predicting Viscosity of Small Organic Molecules.

Viscosity is a crucial material property that influences a wide range of applications, including three-dimensional (3D) printing, lubricants, and solvents. However, experimental approaches to measuring viscosity face challenges such as handling multiple samples, high costs, and limited compound availability. To address these limitations, we have developed computational models for viscosity prediction of small organic molecules, utilizing machine learning (ML) and nonequilibrium molecular dynamics (NEMD) simulations. Our ML framework, which includes feed-forward neural networks (FNN) and physics-informed neural networks (PINN), is based on the largest data set of small molecule viscosities compiled from the literature. The PINN model, in particular, incorporates temperature dependence through a four-parameter model, allowing for the direct prediction of continuous temperature-dependent viscosity curves. The ML models demonstrate exceptional prediction accuracy for the viscosity of various organic compounds across a wide range of temperatures. External validation of our models further confirms that the ML prediction models outperform the NEMD approach in predicting viscosity across a diverse range of organic molecules and temperatures. This highlights the potential of ML models to overcome limitations in traditional MD simulations, which often struggle with accuracy for specific molecules or temperature ranges. Our further feature importance analysis revealed a strong correlation between molecular structure and viscosity. We emphasize the key role of substructures in determining viscosity, offering deeper molecular insights for material design with tailored viscosity.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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