探讨β-发夹肽自组装的温度依赖性。

IF 3.1 3区 化学 Q2 Chemistry
Tuan D. Samdin, Xiaoyi Wang, Galit Fichman and Joel P. Schneider
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引用次数: 0

摘要

在这里,我们研究了疏水性在β-发夹肽两亲分子家族的温度依赖性自组装中的作用,通过热折叠蛋白质使其从冷变性状态。这是由新的计算工具的发展促进了在原子群的分辨率测量溶剂可及电荷(SAC)和溶剂可及疏水性(SAH)。处于无序状态的多肽具有较大的SAH值,可以将其热组装转变为可观察的温度,这对于大多数天然蛋白质来说是不可能的,因此可以进行多肽之间的比较。我们发现,与具有较小SAH值的肽相比,具有较大SAH值的肽在更低的温度和更快的速度下组装成富含β-薄片的纤维。这与肽组装是由疏水效应驱动的一致,疏水效应涉及在组装过程中从疏水部分释放有序水。我们还发现肽的SAH值与Tg呈线性相关,Tg是定义单体肽向原纤维转变的中点,对于具有相似电荷的肽。有趣的是,数据还表明,虽然熵驱动组装,但组装转变发生的确切温度可能受到额外热力学因素的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Exploring the temperature dependence of β-hairpin peptide self-assembly†

Exploring the temperature dependence of β-hairpin peptide self-assembly†

Herein, we study the role that hydrophobicity plays in the temperature-dependent self-assembly of a family of β-hairpin peptide amphiphiles through the lens of thermally folding a protein from its cold-denatured state. This was facilitated by the development of new computational tools to measure solvent-accessible charge (SAC) and solvent-accessible hydrophobicity (SAH) at the resolution of atomic groups. Peptides in their disordered states are characterized by large SAH values that shift their thermal assembly transitions to observable temperatures, which is not possible for most native proteins, allowing comparisons amongst peptides to be made. We find that peptides with large SAH values assemble into β-sheet-rich fibers at lower temperatures and at faster rates than peptides having smaller SAH values. This is consistent with peptide assembly being driven by the hydrophobic effect, which involves the release of ordered water from hydrophobic moieties during assembly. We also find that peptide SAH values correlate linearly with Tg, the midpoint of the transition defining monomeric peptide transitioning to fibrils, for peptides of similar charge. Interestingly, the data also suggest that although entropy drives assembly, the exact temperature at which the assembly transition takes place is likely influenced by additional thermodynamic considerations.

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来源期刊
Faraday Discussions
Faraday Discussions CHEMISTRY, PHYSICAL-
CiteScore
4.90
自引率
0.00%
发文量
259
审稿时长
2.8 months
期刊介绍: Discussion summary and research papers from discussion meetings that focus on rapidly developing areas of physical chemistry and its interfaces
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