工程细菌利用多细胞人工神经网络结构将3位二进制码转换为3位灰色码。

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Saswata Chakraborty, Sangram Bagh
{"title":"工程细菌利用多细胞人工神经网络结构将3位二进制码转换为3位灰色码。","authors":"Saswata Chakraborty, Sangram Bagh","doi":"10.1021/acssynbio.5c00145","DOIUrl":null,"url":null,"abstract":"<p><p>The neuromorphic computing with genetically engineered cells is still in its infancy and shows great promise to solve various complex computational problems. The success of such computing is dependent on the expansion of its capability to build new and versatile computation functions. The conversion of a binary code to a Gray code is a fundamental concept in digital electronics and computer science. In this work, by using genetically engineered <i>E. coli</i> cells, we created a single-layer artificial neural network (ANN) that works as a 3-bit-binary to Gray code converter. The ANN architecture is built by five engineered <i>E. coli</i> populations in a liquid culture, where a binary input in chemical form is given by adding or not adding (1/0) three chemical inputs, and the converted codes are manifested by the appropriate expression of three fluorescent proteins. The work may have significance in biocomputer technology development, bacterial ANN, and synthetic biology.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":""},"PeriodicalIF":3.9000,"publicationDate":"2025-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Engineered Bacteria Convert a 3-Bit Binary Code to a 3-Bit Gray Code by Multicellular Artificial-Neural-Network-Type Architecture.\",\"authors\":\"Saswata Chakraborty, Sangram Bagh\",\"doi\":\"10.1021/acssynbio.5c00145\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The neuromorphic computing with genetically engineered cells is still in its infancy and shows great promise to solve various complex computational problems. The success of such computing is dependent on the expansion of its capability to build new and versatile computation functions. The conversion of a binary code to a Gray code is a fundamental concept in digital electronics and computer science. In this work, by using genetically engineered <i>E. coli</i> cells, we created a single-layer artificial neural network (ANN) that works as a 3-bit-binary to Gray code converter. The ANN architecture is built by five engineered <i>E. coli</i> populations in a liquid culture, where a binary input in chemical form is given by adding or not adding (1/0) three chemical inputs, and the converted codes are manifested by the appropriate expression of three fluorescent proteins. The work may have significance in biocomputer technology development, bacterial ANN, and synthetic biology.</p>\",\"PeriodicalId\":26,\"journal\":{\"name\":\"ACS Synthetic Biology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":3.9000,\"publicationDate\":\"2025-05-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Synthetic Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1021/acssynbio.5c00145\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.5c00145","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

摘要

基因工程细胞的神经形态计算仍处于起步阶段,在解决各种复杂的计算问题方面显示出巨大的前景。这种计算的成功取决于其能力的扩展,以构建新的和通用的计算功能。二进制码到格雷码的转换是数字电子学和计算机科学中的一个基本概念。在这项工作中,通过使用基因工程的大肠杆菌细胞,我们创建了一个单层人工神经网络(ANN),它可以作为3位二进制到格雷码转换器。人工神经网络结构由5个工程大肠杆菌群体在液体培养中构建,其中通过添加或不添加(1/0)三种化学输入来给出化学形式的二进制输入,转换后的代码通过三种荧光蛋白的适当表达来表现。这项工作对生物计算机技术的发展、细菌人工神经网络和合成生物学具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Engineered Bacteria Convert a 3-Bit Binary Code to a 3-Bit Gray Code by Multicellular Artificial-Neural-Network-Type Architecture.

The neuromorphic computing with genetically engineered cells is still in its infancy and shows great promise to solve various complex computational problems. The success of such computing is dependent on the expansion of its capability to build new and versatile computation functions. The conversion of a binary code to a Gray code is a fundamental concept in digital electronics and computer science. In this work, by using genetically engineered E. coli cells, we created a single-layer artificial neural network (ANN) that works as a 3-bit-binary to Gray code converter. The ANN architecture is built by five engineered E. coli populations in a liquid culture, where a binary input in chemical form is given by adding or not adding (1/0) three chemical inputs, and the converted codes are manifested by the appropriate expression of three fluorescent proteins. The work may have significance in biocomputer technology development, bacterial ANN, and synthetic biology.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信