{"title":"希夫碱多吡啶铀酰(V)配合物反应能和电子/键性质的相对论DFT研究:14基团功能化铀酰外氧基的影响","authors":"Xiu-Jun Zheng, Qing-Jiang Pan, Yan-Ping Dong","doi":"10.1007/s00894-025-06382-z","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>The safe immobilization of radionuclides and the removal of nuclear waste contamination from environment require a thorough understanding of the structures, reaction behaviour and bonding properties of uranium complexes. The cation-cation interaction (CCI), which is also known as the direct actinyl-actinyl bonding interaction, is common only for An(V). A series of binuclear uranyl compounds of Schiff-base polypyrrolic macrocycle (H<sub>4</sub>L), [{(Me<sub>3</sub>R)OU<sup>V</sup>O}<sub>2</sub>(L)] (R = C (<b>1</b>), Si (<b>2</b>), Ge (<b>3</b>), Sn (<b>4</b>) and Pb (<b>5</b>)), featuring CCIs, were systematically investigated by relativistic density functional theory (DFT). Three electronic states of singlet (<i>f</i><sup><i>αβ</i></sup>), symmetry-broken (<i>f</i><sup><i>α</i></sup><i>f</i><sup><i>β</i></sup>), and triplet (<i>f</i><sup><i>α</i></sup><i>f</i><sup><i>α</i></sup>) were calculated, which are labeled as <b>s</b>, <b>s′</b> and <b>t</b>, respectively. Calculations show that the latter two electronic states are energy-degenerate, and much lower in energy than the singlet state. Along compounds <b>1 t</b> to <b>5 t</b>, R − O<sub>exo</sub> bonds gradually decrease in strength, while U − O<sub>exo</sub> bond gradually increases. The quantum theory of atoms in molecule (QTAIM) analyses show that the R − O<sub>exo</sub> bond is a covalent one for <b>1 t</b>, and it turns a covalent/ionic mixed bond in <b>2 t</b> and <b>3 t</b>, and is attributed to a dative bond for <b>4 t</b> and <b>5 t</b>. From <b>1 t</b> to <b>4 t</b>, the HOMO and H-1 orbitals, as well as the π(R − O<sub>exo</sub>) and π(U − O<sub>exo</sub>) orbitals ascend to the higher energy level. In addition, the shortest bond distance, the maximum vibration wavenumber and the most negative interaction energy <i>E</i><sub>int</sub> of R − O<sub>exo</sub> bond result in the strongest CCI in <b>1 t</b> among <b>1 t</b> − <b>5 t</b>, along with the corresponding lowest reaction free energy. Our calculations reveal that the CCIs are instrumental in enhancing the stability of <b>1 t</b> − <b>5 t</b>.</p><h3>Methods</h3><p>Structural optimizations of all compounds were performed in the gas phase using the Priroda code. A generalized gradient approximation (GGA) of the Perdew-Burke-Ernzerhoff (PBE) functional was used. All-electron correlation-consistent double-ς polarized quality basis sets were used in all calculations. Single point calculations have been performed by using the ADF 2012 code on the basis of optimized geometries from Priroda code. The scalar relativistic zero-order regular approximation (ZORA) method and Slater-type triple-zeta polarization (TZP) basis sets were employed. Solvation effects were considered with the Conductor-Like Screening Model (COSMO) and spin–orbit coupling (SOC) effects were explicitly included in the calculations. Single-point calculations were carried out using the Gaussian09 program. Stuttgart relativistic large-core effective core potentials (RLC-ECPs) and corresponding basis sets were applied for U, def2SVP for Sn and Pb, and 6-31G* for other atoms. Then, the quantum theory of atoms in molecules (QTAIM) data were computed with the Multiwfn 3.3.3 package. </p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 6","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Relativistic DFT investigation for reaction energies and electronic/bonding properties of Schiff-base polypyrrolic uranyl(V) complexes: effects of group 14-functionalized uranyl exo-oxo group\",\"authors\":\"Xiu-Jun Zheng, Qing-Jiang Pan, Yan-Ping Dong\",\"doi\":\"10.1007/s00894-025-06382-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>The safe immobilization of radionuclides and the removal of nuclear waste contamination from environment require a thorough understanding of the structures, reaction behaviour and bonding properties of uranium complexes. The cation-cation interaction (CCI), which is also known as the direct actinyl-actinyl bonding interaction, is common only for An(V). A series of binuclear uranyl compounds of Schiff-base polypyrrolic macrocycle (H<sub>4</sub>L), [{(Me<sub>3</sub>R)OU<sup>V</sup>O}<sub>2</sub>(L)] (R = C (<b>1</b>), Si (<b>2</b>), Ge (<b>3</b>), Sn (<b>4</b>) and Pb (<b>5</b>)), featuring CCIs, were systematically investigated by relativistic density functional theory (DFT). Three electronic states of singlet (<i>f</i><sup><i>αβ</i></sup>), symmetry-broken (<i>f</i><sup><i>α</i></sup><i>f</i><sup><i>β</i></sup>), and triplet (<i>f</i><sup><i>α</i></sup><i>f</i><sup><i>α</i></sup>) were calculated, which are labeled as <b>s</b>, <b>s′</b> and <b>t</b>, respectively. Calculations show that the latter two electronic states are energy-degenerate, and much lower in energy than the singlet state. Along compounds <b>1 t</b> to <b>5 t</b>, R − O<sub>exo</sub> bonds gradually decrease in strength, while U − O<sub>exo</sub> bond gradually increases. The quantum theory of atoms in molecule (QTAIM) analyses show that the R − O<sub>exo</sub> bond is a covalent one for <b>1 t</b>, and it turns a covalent/ionic mixed bond in <b>2 t</b> and <b>3 t</b>, and is attributed to a dative bond for <b>4 t</b> and <b>5 t</b>. From <b>1 t</b> to <b>4 t</b>, the HOMO and H-1 orbitals, as well as the π(R − O<sub>exo</sub>) and π(U − O<sub>exo</sub>) orbitals ascend to the higher energy level. In addition, the shortest bond distance, the maximum vibration wavenumber and the most negative interaction energy <i>E</i><sub>int</sub> of R − O<sub>exo</sub> bond result in the strongest CCI in <b>1 t</b> among <b>1 t</b> − <b>5 t</b>, along with the corresponding lowest reaction free energy. Our calculations reveal that the CCIs are instrumental in enhancing the stability of <b>1 t</b> − <b>5 t</b>.</p><h3>Methods</h3><p>Structural optimizations of all compounds were performed in the gas phase using the Priroda code. A generalized gradient approximation (GGA) of the Perdew-Burke-Ernzerhoff (PBE) functional was used. All-electron correlation-consistent double-ς polarized quality basis sets were used in all calculations. Single point calculations have been performed by using the ADF 2012 code on the basis of optimized geometries from Priroda code. The scalar relativistic zero-order regular approximation (ZORA) method and Slater-type triple-zeta polarization (TZP) basis sets were employed. Solvation effects were considered with the Conductor-Like Screening Model (COSMO) and spin–orbit coupling (SOC) effects were explicitly included in the calculations. Single-point calculations were carried out using the Gaussian09 program. Stuttgart relativistic large-core effective core potentials (RLC-ECPs) and corresponding basis sets were applied for U, def2SVP for Sn and Pb, and 6-31G* for other atoms. Then, the quantum theory of atoms in molecules (QTAIM) data were computed with the Multiwfn 3.3.3 package. </p></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 6\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-05-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06382-z\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06382-z","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
放射性核素的安全固定化和核废料污染的清除需要对铀配合物的结构、反应行为和键合性质有透彻的了解。阳离子-阳离子相互作用(CCI),也称为直接的actitinyl - actitinyl键相互作用,仅在An(V)中常见。用相对论密度泛函理论(DFT)系统地研究了一系列具有CCIs特征的希夫碱多吡啶大环(H4L), [{(Me3R)OUVO}2(L)] (R = C (1), Si (2), Ge (3), Sn(4)和Pb(5))双核铀酰化合物。计算了单重态(fαβ)、对称破缺态(fαfβ)和三重态(fαfα)的三个电子态,分别记为s、s′和t。计算表明后两种电子态是能量简并态,比单重态的能量低得多。从化合物1 t到5 t, R−Oexo键的强度逐渐减小,而U−Oexo键的强度逐渐增大。分子原子量子理论(QTAIM)分析表明,R−Oexo键在1 t时为共价键,在2 t和3 t时为共价键/离子混合键,在4 t和5 t时为负键。从1 t到4 t, HOMO和H-1轨道,以及π(R−Oexo)和π(U−Oexo)轨道上升到更高的能级。此外,R - Oexo键的键距最短、振动波数最大、负相互作用能Eint最大,导致了1 t - 5 t中1 t的CCI最强,相应的反应自由能最低。我们的计算表明,CCIs有助于提高1 t−5的稳定性。方法使用Priroda代码在气相中对所有化合物进行结构优化。采用了PBE泛函的广义梯度近似(GGA)。所有计算均采用全电子相关一致的双ζ极化质量基集。在Priroda代码优化几何图形的基础上,使用ADF 2012代码进行了单点计算。采用标量相对论零阶正则逼近(ZORA)方法和slater型三ζ极化(TZP)基集。用类导体筛选模型(COSMO)考虑了溶剂化效应,并明确地将自旋轨道耦合(SOC)效应纳入计算。单点计算使用Gaussian09程序进行。U采用Stuttgart相对论大核有效核势(RLC-ECPs)和相应的基集,Sn和Pb采用def2SVP,其他原子采用6-31G*。然后,使用Multiwfn 3.3.3软件包计算分子中原子的量子理论(QTAIM)数据。
Relativistic DFT investigation for reaction energies and electronic/bonding properties of Schiff-base polypyrrolic uranyl(V) complexes: effects of group 14-functionalized uranyl exo-oxo group
Context
The safe immobilization of radionuclides and the removal of nuclear waste contamination from environment require a thorough understanding of the structures, reaction behaviour and bonding properties of uranium complexes. The cation-cation interaction (CCI), which is also known as the direct actinyl-actinyl bonding interaction, is common only for An(V). A series of binuclear uranyl compounds of Schiff-base polypyrrolic macrocycle (H4L), [{(Me3R)OUVO}2(L)] (R = C (1), Si (2), Ge (3), Sn (4) and Pb (5)), featuring CCIs, were systematically investigated by relativistic density functional theory (DFT). Three electronic states of singlet (fαβ), symmetry-broken (fαfβ), and triplet (fαfα) were calculated, which are labeled as s, s′ and t, respectively. Calculations show that the latter two electronic states are energy-degenerate, and much lower in energy than the singlet state. Along compounds 1 t to 5 t, R − Oexo bonds gradually decrease in strength, while U − Oexo bond gradually increases. The quantum theory of atoms in molecule (QTAIM) analyses show that the R − Oexo bond is a covalent one for 1 t, and it turns a covalent/ionic mixed bond in 2 t and 3 t, and is attributed to a dative bond for 4 t and 5 t. From 1 t to 4 t, the HOMO and H-1 orbitals, as well as the π(R − Oexo) and π(U − Oexo) orbitals ascend to the higher energy level. In addition, the shortest bond distance, the maximum vibration wavenumber and the most negative interaction energy Eint of R − Oexo bond result in the strongest CCI in 1 t among 1 t − 5 t, along with the corresponding lowest reaction free energy. Our calculations reveal that the CCIs are instrumental in enhancing the stability of 1 t − 5 t.
Methods
Structural optimizations of all compounds were performed in the gas phase using the Priroda code. A generalized gradient approximation (GGA) of the Perdew-Burke-Ernzerhoff (PBE) functional was used. All-electron correlation-consistent double-ς polarized quality basis sets were used in all calculations. Single point calculations have been performed by using the ADF 2012 code on the basis of optimized geometries from Priroda code. The scalar relativistic zero-order regular approximation (ZORA) method and Slater-type triple-zeta polarization (TZP) basis sets were employed. Solvation effects were considered with the Conductor-Like Screening Model (COSMO) and spin–orbit coupling (SOC) effects were explicitly included in the calculations. Single-point calculations were carried out using the Gaussian09 program. Stuttgart relativistic large-core effective core potentials (RLC-ECPs) and corresponding basis sets were applied for U, def2SVP for Sn and Pb, and 6-31G* for other atoms. Then, the quantum theory of atoms in molecules (QTAIM) data were computed with the Multiwfn 3.3.3 package.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
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Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.