基于机器学习的电子性质分析作为查尔酮衍生物抗胆碱酯酶活性的预测因子

IF 3 3区 化学 Q3 CHEMISTRY, PHYSICAL
Thiago Buzelli , Bruno Ipaves , Felipe Gollino , Wanda Pereira Almeida , Douglas Soares Galvão , Pedro Alves da Silva Autreto
{"title":"基于机器学习的电子性质分析作为查尔酮衍生物抗胆碱酯酶活性的预测因子","authors":"Thiago Buzelli ,&nbsp;Bruno Ipaves ,&nbsp;Felipe Gollino ,&nbsp;Wanda Pereira Almeida ,&nbsp;Douglas Soares Galvão ,&nbsp;Pedro Alves da Silva Autreto","doi":"10.1016/j.comptc.2025.115268","DOIUrl":null,"url":null,"abstract":"<div><div>In this study, we investigated the correlation between the electronic properties of anticholinesterase compounds and their biological activity. While this correlation has been effectively explored in previous studies, we employed a more advanced approach: machine learning. We analyzed a set of 22 molecules sharing a similar chalcone skeleton, categorizing them into two groups based on their IC<sub>50</sub> indices: high and low activity. Using the open-source software Orca, we calculated the geometries and electronic structures of these molecules. Over a hundred parameters were extracted, including Mulliken and Lowdin electronic populations, molecular orbital energies, and Mayer’s free valences, forming the foundation for machine learning features. Through our analysis, we developed models capable of distinguishing between the two groups. Notably, the most informative descriptor relied solely on electronic populations and orbital energies. Identifying computationally relevant properties for biological activity enhances drug development efficiency, saving time and resources.</div></div>","PeriodicalId":284,"journal":{"name":"Computational and Theoretical Chemistry","volume":"1249 ","pages":"Article 115268"},"PeriodicalIF":3.0000,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Machine learning-based analysis of electronic properties as predictors of anticholinesterase activity in chalcone derivatives\",\"authors\":\"Thiago Buzelli ,&nbsp;Bruno Ipaves ,&nbsp;Felipe Gollino ,&nbsp;Wanda Pereira Almeida ,&nbsp;Douglas Soares Galvão ,&nbsp;Pedro Alves da Silva Autreto\",\"doi\":\"10.1016/j.comptc.2025.115268\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>In this study, we investigated the correlation between the electronic properties of anticholinesterase compounds and their biological activity. While this correlation has been effectively explored in previous studies, we employed a more advanced approach: machine learning. We analyzed a set of 22 molecules sharing a similar chalcone skeleton, categorizing them into two groups based on their IC<sub>50</sub> indices: high and low activity. Using the open-source software Orca, we calculated the geometries and electronic structures of these molecules. Over a hundred parameters were extracted, including Mulliken and Lowdin electronic populations, molecular orbital energies, and Mayer’s free valences, forming the foundation for machine learning features. Through our analysis, we developed models capable of distinguishing between the two groups. Notably, the most informative descriptor relied solely on electronic populations and orbital energies. Identifying computationally relevant properties for biological activity enhances drug development efficiency, saving time and resources.</div></div>\",\"PeriodicalId\":284,\"journal\":{\"name\":\"Computational and Theoretical Chemistry\",\"volume\":\"1249 \",\"pages\":\"Article 115268\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-05-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and Theoretical Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2210271X2500204X\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and Theoretical Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2210271X2500204X","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

在本研究中,我们研究了抗胆碱酯酶化合物的电子性质与其生物活性之间的关系。虽然在之前的研究中已经有效地探索了这种相关性,但我们采用了一种更先进的方法:机器学习。我们分析了一组22个具有相似查尔酮骨架的分子,根据它们的IC50指数将它们分为两组:高活性和低活性。使用开源软件Orca,我们计算了这些分子的几何形状和电子结构。超过100个参数被提取出来,包括Mulliken和Lowdin电子居群、分子轨道能量和Mayer的自由价,形成了机器学习特征的基础。通过我们的分析,我们开发了能够区分这两组人的模型。值得注意的是,信息量最大的描述符仅依赖于电子居群和轨道能量。通过计算确定生物活性的相关性质可以提高药物开发效率,节省时间和资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Machine learning-based analysis of electronic properties as predictors of anticholinesterase activity in chalcone derivatives
In this study, we investigated the correlation between the electronic properties of anticholinesterase compounds and their biological activity. While this correlation has been effectively explored in previous studies, we employed a more advanced approach: machine learning. We analyzed a set of 22 molecules sharing a similar chalcone skeleton, categorizing them into two groups based on their IC50 indices: high and low activity. Using the open-source software Orca, we calculated the geometries and electronic structures of these molecules. Over a hundred parameters were extracted, including Mulliken and Lowdin electronic populations, molecular orbital energies, and Mayer’s free valences, forming the foundation for machine learning features. Through our analysis, we developed models capable of distinguishing between the two groups. Notably, the most informative descriptor relied solely on electronic populations and orbital energies. Identifying computationally relevant properties for biological activity enhances drug development efficiency, saving time and resources.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.20
自引率
10.70%
发文量
331
审稿时长
31 days
期刊介绍: Computational and Theoretical Chemistry publishes high quality, original reports of significance in computational and theoretical chemistry including those that deal with problems of structure, properties, energetics, weak interactions, reaction mechanisms, catalysis, and reaction rates involving atoms, molecules, clusters, surfaces, and bulk matter.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信