在细胞群之间分布化学反应:范例研究

IF 3.9 2区 工程技术 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Sameer Sekhri, Chinmay K. Haritas, J. Krishnan
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引用次数: 0

摘要

化学反应在不同反应器或反应室之间的分布是化学反应工程的基础。它也与系统生物学和合成生物学相关。在这项研究中,我们研究了分布在两个细胞群之间的样品反应系统,它们彼此之间有显著的相互作用。我们研究了实验合成生物学文献中由特定研究驱动的两种情况,一种涉及反应/组分的顺序分布,另一种涉及平行分布。我们开发了一个模型和系统框架来评估产品的整体生产率以及它如何依赖于各种参数:内在动力学参数,以及细胞群生长/死亡/相互作用参数。我们使用计算,分析和半分析方法来分析相关模型,并分离结构和参数依赖的定性见解。然后,我们扩展建模框架,以评估外部资源对系统行为的潜在影响。总的来说,我们的分析揭示了细胞之间和水平之间的非线性相互作用如何对化学反应的分布产生深远的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Distributing Chemical Reactions between Cell Populations: Exemplar Studies
The distribution of chemical reactions between different reactors or reaction compartments is foundational to chemical reaction engineering. It is also of relevance to both systems and synthetic biology. In this study we examine sample reaction systems distributed between two cell populations which have significant interactions between each other. We examine two scenarios motivated by specific studies in the experimental synthetic biology literature, one which involves a sequential distribution of reactions/components and one which involves a parallel distribution. We develop a modelling and systems framework to assess the overall production rate of product and how it depends on various parameters: intrinsic kinetic parameters, as well as cell population growth/death/interaction parameters. We use computational, analytical and semi-analytical methods to analyse the associated model and isolate insights both structural and parameter dependent qualitative insights. We then expand the modelling framework to assess the potential effect of external resources on systems behaviour. Overall, our analysis reveals how significant nonlinear interactions between cells and across levels has a profound effect on the distribution of chemical reactions.
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来源期刊
Computers & Chemical Engineering
Computers & Chemical Engineering 工程技术-工程:化工
CiteScore
8.70
自引率
14.00%
发文量
374
审稿时长
70 days
期刊介绍: Computers & Chemical Engineering is primarily a journal of record for new developments in the application of computing and systems technology to chemical engineering problems.
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