Anudeep Surendran , David Pinto-Ramos , Rafael Menezes , Ricardo Martinez-Garcia
{"title":"空间力矩动力学和生物量密度方程在基于个体的模拟中提供了互补但有限的模式形成描述","authors":"Anudeep Surendran , David Pinto-Ramos , Rafael Menezes , Ricardo Martinez-Garcia","doi":"10.1016/j.physd.2025.134703","DOIUrl":null,"url":null,"abstract":"<div><div>Spatial patterning is common in ecological systems and has been extensively studied via different modeling approaches. Individual-based models (IBMs) accurately describe nonlinear interactions at the organism level and the stochastic spatial dynamics that drives pattern formation, but their computational cost scales quickly with system complexity, limiting their practical use. Population-level approximations such as spatial moment dynamics (SMD)—which describe the moments of organism distributions—and coarse-grained biomass density models have been developed to address this limitation. However, the extent to which these approximated descriptions accurately capture the spatial patterns and population sizes emerging from individual-level simulations remains an open question. We investigate this issue considering a prototypical population dynamics IBM with long-range dispersal and intraspecific competition, for which we derive both its SMD and coarse-grained density approximations. We systematically compare the performance of these two approximations at predicting IBM population abundances and spatial patterns. Our results highlight that SMD and density-based approximations complement each other by correctly capturing these two population features within different parameter regimes. Importantly, we identify regions of the parameter space in which neither approximation performed well, which should encourage the development of more refined IBM approximation approaches.</div></div>","PeriodicalId":20050,"journal":{"name":"Physica D: Nonlinear Phenomena","volume":"477 ","pages":"Article 134703"},"PeriodicalIF":2.7000,"publicationDate":"2025-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Spatial moment dynamics and biomass density equations provide complementary, yet limited, descriptions of pattern formation in individual-based simulations\",\"authors\":\"Anudeep Surendran , David Pinto-Ramos , Rafael Menezes , Ricardo Martinez-Garcia\",\"doi\":\"10.1016/j.physd.2025.134703\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Spatial patterning is common in ecological systems and has been extensively studied via different modeling approaches. Individual-based models (IBMs) accurately describe nonlinear interactions at the organism level and the stochastic spatial dynamics that drives pattern formation, but their computational cost scales quickly with system complexity, limiting their practical use. Population-level approximations such as spatial moment dynamics (SMD)—which describe the moments of organism distributions—and coarse-grained biomass density models have been developed to address this limitation. However, the extent to which these approximated descriptions accurately capture the spatial patterns and population sizes emerging from individual-level simulations remains an open question. We investigate this issue considering a prototypical population dynamics IBM with long-range dispersal and intraspecific competition, for which we derive both its SMD and coarse-grained density approximations. We systematically compare the performance of these two approximations at predicting IBM population abundances and spatial patterns. Our results highlight that SMD and density-based approximations complement each other by correctly capturing these two population features within different parameter regimes. Importantly, we identify regions of the parameter space in which neither approximation performed well, which should encourage the development of more refined IBM approximation approaches.</div></div>\",\"PeriodicalId\":20050,\"journal\":{\"name\":\"Physica D: Nonlinear Phenomena\",\"volume\":\"477 \",\"pages\":\"Article 134703\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2025-04-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Physica D: Nonlinear Phenomena\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167278925001800\",\"RegionNum\":3,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MATHEMATICS, APPLIED\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physica D: Nonlinear Phenomena","FirstCategoryId":"100","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167278925001800","RegionNum":3,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICS, APPLIED","Score":null,"Total":0}
Spatial moment dynamics and biomass density equations provide complementary, yet limited, descriptions of pattern formation in individual-based simulations
Spatial patterning is common in ecological systems and has been extensively studied via different modeling approaches. Individual-based models (IBMs) accurately describe nonlinear interactions at the organism level and the stochastic spatial dynamics that drives pattern formation, but their computational cost scales quickly with system complexity, limiting their practical use. Population-level approximations such as spatial moment dynamics (SMD)—which describe the moments of organism distributions—and coarse-grained biomass density models have been developed to address this limitation. However, the extent to which these approximated descriptions accurately capture the spatial patterns and population sizes emerging from individual-level simulations remains an open question. We investigate this issue considering a prototypical population dynamics IBM with long-range dispersal and intraspecific competition, for which we derive both its SMD and coarse-grained density approximations. We systematically compare the performance of these two approximations at predicting IBM population abundances and spatial patterns. Our results highlight that SMD and density-based approximations complement each other by correctly capturing these two population features within different parameter regimes. Importantly, we identify regions of the parameter space in which neither approximation performed well, which should encourage the development of more refined IBM approximation approaches.
期刊介绍:
Physica D (Nonlinear Phenomena) publishes research and review articles reporting on experimental and theoretical works, techniques and ideas that advance the understanding of nonlinear phenomena. Topics encompass wave motion in physical, chemical and biological systems; physical or biological phenomena governed by nonlinear field equations, including hydrodynamics and turbulence; pattern formation and cooperative phenomena; instability, bifurcations, chaos, and space-time disorder; integrable/Hamiltonian systems; asymptotic analysis and, more generally, mathematical methods for nonlinear systems.