{"title":"量子晶体学中l-丙氨酸和牛磺酸结构因子的精确温度依赖性","authors":"Mibuki Hayashi , Takashi Nishioka , Hidetaka Kasai , Eiji Nishibori","doi":"10.1107/S2052252525002647","DOIUrl":null,"url":null,"abstract":"<div><div>The temperature dependence of accurate structure factors of <span>l</span>-alanine and taurine was measured at the SPring-8 BL02B1 beamline. The quality of the structure factors is evaluated by charge density and quantum crystallographic studies. The effects of small amounts of twinning on the charge density study for taurine are also described.</div></div><div><div>Multi-temperature high-quality structure factors of <span>l</span>-alanine and taurine were re-measured at the SPring-8 BL02B1 beamline for method development in quantum crystallography. The quality of the data was evaluated by comparison with previous studies. In the case of taurine, we found that the data quality was highly affected by small amounts of twinning. Residual electron density around the sulfur atoms observed in a previous study [Hibbs <em>et al.</em> (2003). <em>Chem. A Eur. J.</em><strong>9</strong>, 1075–1084] disappeared with the re-measured data. X-ray wavefunction refinements were carried out on these data. The difference electron density between the X-ray constrained wavefunction (XCW) results and the Hartree–Fock charge density showed a positive difference electron density around the nucleus and a negative difference electron density between the bonds. These features were consistent with those reported [Hupf <em>et al.</em> (2023). <em>J. Chem. Phys.</em><strong>158</strong>, 124103]. It was found that the deformation density around the nucleus and between bonds due to electron correlations and electronic polarization could be confirmed by the XCW method using the present structure factors.</div></div>","PeriodicalId":14775,"journal":{"name":"IUCrJ","volume":"12 3","pages":"Pages 384-392"},"PeriodicalIF":2.9000,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Accurate temperature dependence of structure factors of l-alanine and taurine for quantum crystallography\",\"authors\":\"Mibuki Hayashi , Takashi Nishioka , Hidetaka Kasai , Eiji Nishibori\",\"doi\":\"10.1107/S2052252525002647\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The temperature dependence of accurate structure factors of <span>l</span>-alanine and taurine was measured at the SPring-8 BL02B1 beamline. The quality of the structure factors is evaluated by charge density and quantum crystallographic studies. The effects of small amounts of twinning on the charge density study for taurine are also described.</div></div><div><div>Multi-temperature high-quality structure factors of <span>l</span>-alanine and taurine were re-measured at the SPring-8 BL02B1 beamline for method development in quantum crystallography. The quality of the data was evaluated by comparison with previous studies. In the case of taurine, we found that the data quality was highly affected by small amounts of twinning. Residual electron density around the sulfur atoms observed in a previous study [Hibbs <em>et al.</em> (2003). <em>Chem. A Eur. J.</em><strong>9</strong>, 1075–1084] disappeared with the re-measured data. X-ray wavefunction refinements were carried out on these data. The difference electron density between the X-ray constrained wavefunction (XCW) results and the Hartree–Fock charge density showed a positive difference electron density around the nucleus and a negative difference electron density between the bonds. These features were consistent with those reported [Hupf <em>et al.</em> (2023). <em>J. Chem. Phys.</em><strong>158</strong>, 124103]. It was found that the deformation density around the nucleus and between bonds due to electron correlations and electronic polarization could be confirmed by the XCW method using the present structure factors.</div></div>\",\"PeriodicalId\":14775,\"journal\":{\"name\":\"IUCrJ\",\"volume\":\"12 3\",\"pages\":\"Pages 384-392\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2025-05-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"IUCrJ\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://www.sciencedirect.com/org/science/article/pii/S2052252525000272\",\"RegionNum\":2,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"IUCrJ","FirstCategoryId":"88","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2052252525000272","RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
摘要
在SPring-8 BL02B1光束线上测定了l-丙氨酸和牛磺酸精确结构因子的温度依赖性。通过电荷密度和量子晶体学研究来评价结构因子的质量。本文还描述了少量孪生对牛磺酸电荷密度研究的影响。在SPring-8 BL02B1光束线上重新测量了l-丙氨酸和牛磺酸的多温度高质量结构因子,用于量子晶体学方法的发展。通过与以往研究的比较来评估数据的质量。在牛磺酸的情况下,我们发现数据质量受到少量双胞胎的高度影响。在先前的研究中观察到硫原子周围的剩余电子密度[Hibbs等人(2003)]。化学。一个欧元。J.9, 1075-1084]随重测数据消失。对这些数据进行了x射线波函数改进。x射线约束波函数(XCW)结果与Hartree-Fock电荷密度之间的电子密度差显示原子核周围的电子密度差为正,键之间的电子密度差为负。这些特征与报道[Hupf et al.(2023)]一致。j .化学。Phys.158, 124103]。发现原子核周围和键间由电子相关和电子极化引起的变形密度可以用XCW方法用现有的结构因子来确定。
Accurate temperature dependence of structure factors of l-alanine and taurine for quantum crystallography
The temperature dependence of accurate structure factors of l-alanine and taurine was measured at the SPring-8 BL02B1 beamline. The quality of the structure factors is evaluated by charge density and quantum crystallographic studies. The effects of small amounts of twinning on the charge density study for taurine are also described.
Multi-temperature high-quality structure factors of l-alanine and taurine were re-measured at the SPring-8 BL02B1 beamline for method development in quantum crystallography. The quality of the data was evaluated by comparison with previous studies. In the case of taurine, we found that the data quality was highly affected by small amounts of twinning. Residual electron density around the sulfur atoms observed in a previous study [Hibbs et al. (2003). Chem. A Eur. J.9, 1075–1084] disappeared with the re-measured data. X-ray wavefunction refinements were carried out on these data. The difference electron density between the X-ray constrained wavefunction (XCW) results and the Hartree–Fock charge density showed a positive difference electron density around the nucleus and a negative difference electron density between the bonds. These features were consistent with those reported [Hupf et al. (2023). J. Chem. Phys.158, 124103]. It was found that the deformation density around the nucleus and between bonds due to electron correlations and electronic polarization could be confirmed by the XCW method using the present structure factors.
期刊介绍:
IUCrJ is a new fully open-access peer-reviewed journal from the International Union of Crystallography (IUCr).
The journal will publish high-profile articles on all aspects of the sciences and technologies supported by the IUCr via its commissions, including emerging fields where structural results underpin the science reported in the article. Our aim is to make IUCrJ the natural home for high-quality structural science results. Chemists, biologists, physicists and material scientists will be actively encouraged to report their structural studies in IUCrJ.