时间分辨率低于10毫秒的生物分子系统的高效时间分辨x射线晶体学仪器和方法

IF 3.6 2区 材料科学 Q2 CHEMISTRY, MULTIDISCIPLINARY
IUCrJ Pub Date : 2025-05-01 DOI:10.1107/S205225252500288X
John A. Indergaard , Kashfia Mahmood , Leo Gabriel , Gary Zhong , Adam Lastovka , Matthew J. McLeod , Robert E. Thorne
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引用次数: 0

摘要

通过混合和快速冷却引发反应的方法和仪器可以进行时间分辨率低于10 ms的样品高效时间分辨晶体学研究。该仪器功能强大,适用于不同的样品,具有成本效益,并且可以使用标准样品支架和高通量晶体学光束线远程收集时间分辨x射线数据。时间分辨x射线晶体学在原子分辨阐明酶促反应的结构-功能关系和关键步骤方面具有很大的前景。化学引发反应的主要方法需要在x射线光束线上使用复杂的仪器,需要花费大量的精力来操作和维护这些仪器,并且每个时间点需要大量的晶体(~ 105-109)。我们描述了使用标准晶体学样品支架和在标准高通量晶体学同步加速器光束线上收集邮件x射线数据的高通量时间分辨率生物分子系统研究的仪器和方法。该仪器可以通过混合晶体和底物/配体溶液快速引发反应,通过热猝灭快速捕获结构状态,没有预冷扰动,并产生在单毫秒范围内的时间分辨率,可与晶体学和低温电子显微镜中任何非光引发方法取得的最佳效果相媲美。我们的反应引发方法具有简单,坚固,低成本,适应不同配体溶液和最小体积要求小的优点,使其非常适合常规实验室使用和高通量筛选。我们报告了仪器性能的详细表征,给出了n -乙酰氨基葡萄糖与溶菌酶在8 ms至2 s时间点上的结合结构,每个时间点仅使用一个晶体,并讨论了将时间分辨率提高到1 ms的其他改进。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Instrumentation and methods for efficient time-resolved X-ray crystallography of biomolecular systems with sub-10 ms time resolution
Methods and instrumentation for reaction initiation via mixing followed by rapid cooling allow sample-efficient time-resolved crystallographic studies with sub-10 ms time resolution. The instrumentation is robust, amenable to diverse samples, cost-effective and enables the remote collection of time-resolved X-ray data using standard sample supports and high-throughput cryocrystallography beamlines.
Time-resolved X-ray crystallography has great promise to illuminate structure–function relations and key steps of enzymatic reactions with atomic resolution. The dominant methods for chemically-initiated reactions require complex instrumentation at the X-ray beamline, significant effort to operate and maintain this instrumentation, and enormous numbers (∼105–109) of crystals per time point. We describe instrumentation and methods that enable high-throughput time-resolved study of biomolecular systems using standard crystallography sample supports and mail-in X-ray data collection at standard high-throughput cryocrystallography synchrotron beamlines. The instrumentation allows rapid reaction initiation by mixing of crystals and substrate/ligand solution, rapid capture of structural states via thermal quenching with no pre-cooling perturbations, and yields time resolutions in the single-millisecond range, comparable to the best achieved by any non-photo-initiated method in both crystallography and cryo-electron microscopy. Our approach to reaction initiation has the advantages of simplicity, robustness, low cost, adaptability to diverse ligand solutions and small minimum volume requirements, making it well suited to routine laboratory use and to high-throughput screening. We report the detailed characterization of instrument performance, present structures of binding of N-acetylglucosamine to lysozyme at time points from 8 ms to 2 s determined using only one crystal per time point, and discuss additional improvements that will push time resolution toward 1 ms.
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来源期刊
IUCrJ
IUCrJ CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
7.50
自引率
5.10%
发文量
95
审稿时长
10 weeks
期刊介绍: IUCrJ is a new fully open-access peer-reviewed journal from the International Union of Crystallography (IUCr). The journal will publish high-profile articles on all aspects of the sciences and technologies supported by the IUCr via its commissions, including emerging fields where structural results underpin the science reported in the article. Our aim is to make IUCrJ the natural home for high-quality structural science results. Chemists, biologists, physicists and material scientists will be actively encouraged to report their structural studies in IUCrJ.
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